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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS24795 and ECOLIN_RS24800 are separated by 173 nucleotides
ECOLIN_RS24800 and ECOLIN_RS24810 are separated by 339 nucleotides
ECOLIN_RS24810 and ECOLIN_RS24815 are separated by 80 nucleotides
ECOLIN_RS24815 and ECOLIN_RS24825 are separated by 214 nucleotides
ECOLIN_RS24795: ECOLIN_RS24795 - type 1 fimbria D-mannose specific adhesin FimH, at 4,988,258 to 4,989,160
_RS24795
ECOLIN_RS24800: ECOLIN_RS24800 - gluconate:H+ symporter, at 4,989,334 to 4,990,772
_RS24800
ECOLIN_RS24810: ECOLIN_RS24810 - mannonate dehydratase, at 4,991,112 to 4,992,296
_RS24810
ECOLIN_RS24815: ECOLIN_RS24815 - fructuronate reductase, at 4,992,377 to 4,993,837
_RS24815
ECOLIN_RS24825: ECOLIN_RS24825 - Uxu operon transcriptional regulator, at 4,994,052 to 4,994,807
_RS24825
Group
Condition
ECOLIN
_RS24795
ECOLIN
_RS24800
ECOLIN
_RS24810
ECOLIN
_RS24815
ECOLIN
_RS24825
carbon source
Sodium-DL-Lactate
-0.3
-0.1
N.D.
N.D.
N.D.
carbon source
L-Arabinose
-0.1
-0.2
N.D.
N.D.
N.D.
carbon source
D-Glucose
-0.1
-0.2
N.D.
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.2
-0.1
N.D.
N.D.
N.D.
phage
RB51
+0.0
-0.3
N.D.
N.D.
N.D.
phage
Bas45
-0.0
-0.2
N.D.
N.D.
N.D.
phage
Phi92
-0.2
+0.0
N.D.
N.D.
N.D.
phage
Bas22
-0.2
+0.0
N.D.
N.D.
N.D.
phage
Bas04
-0.2
+0.1
N.D.
N.D.
N.D.
phage
Bas22
+0.1
-0.2
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
+0.1
-0.2
N.D.
N.D.
N.D.
phage
P1vir
+0.1
-0.1
N.D.
N.D.
N.D.
phage
Bas04
-0.1
+0.1
N.D.
N.D.
N.D.
phage
K20
+0.1
-0.1
N.D.
N.D.
N.D.
phage
Bas52
+0.1
-0.1
N.D.
N.D.
N.D.
phage
Phi92
+0.1
-0.1
N.D.
N.D.
N.D.
phage
Bas31
+0.2
-0.1
N.D.
N.D.
N.D.
no phage control
Control_Nissle
+0.2
-0.1
N.D.
N.D.
N.D.
phage
CEV1
+0.2
-0.0
N.D.
N.D.
N.D.
phage
Bas27
+0.2
+0.0
N.D.
N.D.
N.D.
phage
JK16
+0.2
+0.1
N.D.
N.D.
N.D.
phage
Bas44
+0.2
+0.1
N.D.
N.D.
N.D.
phage
JK38
+0.2
+0.1
N.D.
N.D.
N.D.
phage
Bas38
+0.2
+0.1
N.D.
N.D.
N.D.
phage
JK38
+0.1
+0.1
N.D.
N.D.
N.D.
phage
EV219
+0.2
+0.1
N.D.
N.D.
N.D.
phage
Bas37
+0.3
+0.0
N.D.
N.D.
N.D.
phage
Bas27
+0.3
+0.0
N.D.
N.D.
N.D.
phage
Bas05
+0.4
+0.0
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
+0.3
+0.1
N.D.
N.D.
N.D.
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