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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS24775 and ECOLIN_RS24780 are separated by 66 nucleotides
ECOLIN_RS24780 and ECOLIN_RS24785 are separated by 9 nucleotides
ECOLIN_RS24785 and ECOLIN_RS24790 are separated by 12 nucleotides
ECOLIN_RS24790 and ECOLIN_RS24795 are separated by 19 nucleotides
ECOLIN_RS24775: ECOLIN_RS24775 - type 1 fimbria chaperone FimC, at 4,983,754 to 4,984,479
_RS24775
ECOLIN_RS24780: ECOLIN_RS24780 - fimbrial usher FimD, at 4,984,546 to 4,987,182
_RS24780
ECOLIN_RS24785: ECOLIN_RS24785 - type 1 fimbria minor subunit FimF, at 4,987,192 to 4,987,722
_RS24785
ECOLIN_RS24790: ECOLIN_RS24790 - type 1 fimbria minor subunit FimG, at 4,987,735 to 4,988,238
_RS24790
ECOLIN_RS24795: ECOLIN_RS24795 - type 1 fimbria D-mannose specific adhesin FimH, at 4,988,258 to 4,989,160
_RS24795
Group
Condition
ECOLIN
_RS24775
ECOLIN
_RS24780
ECOLIN
_RS24785
ECOLIN
_RS24790
ECOLIN
_RS24795
carbon source
Casamino-acids
-0.7
+0.0
-0.2
-0.5
-0.1
phage
Bas37
-0.7
+0.1
-0.6
-0.4
+0.3
phage
Bas10
-1.0
-0.1
-0.3
+0.1
+0.0
phage
Bas22
-1.6
+0.2
+0.1
+0.1
+0.1
phage
Bas45
-0.8
+0.3
-0.4
-0.2
-0.0
phage
Bas52
-0.8
-0.2
-0.4
+0.1
+0.1
phage
Bas63
-0.6
-0.1
-0.3
+0.1
+0.0
phage
Bas21
-0.3
+0.1
-0.4
-0.4
-0.0
phage
Bas38
-0.6
+0.0
-0.4
-0.1
+0.1
phage
RB51
-0.6
+0.1
-0.2
-0.2
+0.0
phage
Bas05
-1.3
+0.2
-0.2
+0.3
+0.1
carbon source
D-Glucose
-0.6
+0.1
+0.5
-0.7
-0.1
phage
Bas51
+0.3
-0.0
-0.4
-0.5
-0.1
phage
P1vir
+0.2
+0.0
-0.8
-0.1
+0.1
phage
Bas22
+0.4
-0.2
-0.4
-0.1
-0.2
phage
EV219
-0.9
-0.1
+0.0
+0.5
+0.0
phage
Bas31
-0.5
+0.1
-0.3
+0.2
+0.2
phage
Bas31
-0.4
+0.1
-0.3
+0.3
-0.0
phage
JK16
-0.7
+0.1
-0.1
+0.3
+0.2
phage
CEV1
-0.3
+0.3
-0.3
+0.1
+0.2
carbon source
L-Rhamnose
+1.3
-0.0
-1.0
-0.5
+0.3
phage
TP7
+0.1
+0.2
-0.4
+0.6
+0.0
phage
Bas48
+0.8
+0.0
-0.4
+0.0
-0.1
carbon source
L-Arabinose
-0.5
+0.1
+0.7
+0.3
-0.1
phage
RB51
+0.7
+0.0
-0.3
+0.2
+0.0
phage
JK38
+0.1
+0.3
-0.3
+0.5
+0.1
phage
K20
+0.9
+0.0
+0.4
-0.3
-0.1
phage
Bas05
+0.3
+0.0
-0.2
+0.5
+0.4
phage
Phi92
+0.6
+0.1
+0.2
+0.1
+0.1
phage
K25
+0.5
+0.1
+0.3
+0.3
+0.1
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ECOLIN_RS24780
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ECOLIN_RS24785
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ECOLIN_RS24790
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