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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS24395 and ECOLIN_RS33480 are separated by 2 nucleotides
ECOLIN_RS33480 and ECOLIN_RS24405 are separated by 142 nucleotides
ECOLIN_RS24405 and ECOLIN_RS24410 are separated by 92 nucleotides
ECOLIN_RS24410 and ECOLIN_RS24415 overlap by 4 nucleotides
ECOLIN_RS24395: ECOLIN_RS24395 - helix-turn-helix transcriptional regulator, at 4,899,887 to 4,900,378
_RS24395
ECOLIN_RS33480: ECOLIN_RS33480 - HipA domain-containing protein, at 4,900,381 to 4,901,650
_RS33480
ECOLIN_RS24405: ECOLIN_RS24405 - MFS transporter, at 4,901,793 to 4,903,070
_RS24405
ECOLIN_RS24410: ECOLIN_RS24410 - FAD-binding protein, at 4,903,163 to 4,905,235
_RS24410
ECOLIN_RS24415: ECOLIN_RS24415 - acyl CoA:acetate/3-ketoacid CoA transferase, at 4,905,232 to 4,906,773
_RS24415
Group
Condition
ECOLIN
_RS24395
ECOLIN
_RS33480
ECOLIN
_RS24405
ECOLIN
_RS24410
ECOLIN
_RS24415
phage
TP7
-0.1
-0.7
+0.0
-0.2
+0.0
phage
Bas04
-0.6
-0.9
+0.1
+0.0
+0.4
phage
Bas21
-0.4
-0.5
-0.1
-0.0
+0.1
phage
Bas21
-0.1
-0.8
-0.1
+0.1
+0.1
phage
Bas45
-0.4
+0.3
+0.3
-0.1
-0.7
phage
Bas27
-0.2
-0.9
+0.2
+0.0
+0.1
phage
P1vir
-0.3
-0.4
-0.2
+0.2
+0.1
carbon source
D-Glucose
+0.1
-0.5
-0.4
-0.1
+0.3
phage
Bas52
+0.5
-0.6
-0.4
+0.1
-0.1
phage
K20
+0.4
-0.4
-0.1
+0.1
-0.3
phage
Bas38
+0.0
-0.7
+0.2
+0.1
+0.0
phage
Bas48
+0.4
-0.1
-0.5
+0.0
-0.0
phage
JK38
+0.2
-0.6
+0.2
+0.1
+0.0
phage
Bas68
+0.1
-0.8
+0.1
+0.1
+0.3
phage
EV219
+0.3
-0.7
+0.6
+0.1
-0.4
phage
TP7
+0.2
-0.4
+0.3
-0.0
-0.2
phage
CEV1
+0.2
-0.6
-0.1
+0.0
+0.4
phage
Bas37
+0.2
-0.8
+0.2
+0.0
+0.3
phage
JK16
+0.2
-0.4
+0.3
-0.2
+0.0
phage
Bas05
-0.1
-0.2
+0.1
+0.0
+0.8
phage
Bas68
+0.1
+0.1
-0.2
-0.1
+0.5
phage
Bas37
-0.2
+0.7
+0.2
+0.1
-0.2
phage
EV219
+0.4
-0.4
+0.2
+0.1
+0.4
phage
RB51
+0.3
+0.7
+0.1
+0.0
-0.2
phage
RB68
+0.5
+0.2
-0.0
-0.0
+0.3
no phage control
Control_Nissle
+0.4
+0.2
-0.2
+0.1
+0.5
no phage control
Control_Nissle
+0.3
+0.6
-0.4
+0.1
+0.3
phage
Phi92
+0.6
-0.1
+0.5
+0.0
+0.2
phage
Bas27
+0.4
+0.2
+0.3
+0.1
+0.3
carbon source
L-Rhamnose
+0.4
+0.9
-0.1
-0.0
+0.1
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