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Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS24110 and ECOLIN_RS24115 are separated by 62 nucleotides
ECOLIN_RS24115 and ECOLIN_RS24120 are separated by 10 nucleotides
ECOLIN_RS24120 and ECOLIN_RS24125 are separated by 10 nucleotides
ECOLIN_RS24125 and ECOLIN_RS24130 overlap by 1 nucleotides
ECOLIN_RS24110: ECOLIN_RS24110 - cephalosporin-hydrolyzing class C beta-lactamase EC-5, at 4,850,106 to 4,851,239
_RS24110
ECOLIN_RS24115: ECOLIN_RS24115 - fumarate reductase subunit FrdD, at 4,851,302 to 4,851,661
_RS24115
ECOLIN_RS24120: ECOLIN_RS24120 - fumarate reductase subunit FrdC, at 4,851,672 to 4,852,067
_RS24120
ECOLIN_RS24125: ECOLIN_RS24125 - fumarate reductase iron-sulfur protein, at 4,852,078 to 4,852,323
_RS24125
ECOLIN_RS24130: ECOLIN_RS24130 - serine hydrolase, at 4,852,323 to 4,852,523
_RS24130
Group
Condition
ECOLIN
_RS24110
ECOLIN
_RS24115
ECOLIN
_RS24120
ECOLIN
_RS24125
ECOLIN
_RS24130
carbon source
L-Arabinose
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.2
N.D.
N.D.
N.D.
N.D.
phage
EV219
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
L-Rhamnose
-0.2
N.D.
N.D.
N.D.
N.D.
phage
JK16
-0.1
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucose
-0.1
N.D.
N.D.
N.D.
N.D.
phage
K25
-0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas31
-0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas48
-0.1
N.D.
N.D.
N.D.
N.D.
phage
P1vir
-0.1
N.D.
N.D.
N.D.
N.D.
carbon source
Casamino-acids
-0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas21
-0.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Arabinose
-0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas04
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.1
N.D.
N.D.
N.D.
N.D.
carbon source
Casamino-acids
+0.1
N.D.
N.D.
N.D.
N.D.
phage
RB68
+0.1
N.D.
N.D.
N.D.
N.D.
no phage control
Control_Nissle
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas21
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas52
+0.1
N.D.
N.D.
N.D.
N.D.
phage
RB51
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas37
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas45
+0.1
N.D.
N.D.
N.D.
N.D.
phage
Bas44
+0.1
N.D.
N.D.
N.D.
N.D.
phage
RB51
+0.2
N.D.
N.D.
N.D.
N.D.
phage
K25
+0.2
N.D.
N.D.
N.D.
N.D.
phage
Bas48
+0.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucose
+0.2
N.D.
N.D.
N.D.
N.D.
phage
TP7
+0.2
N.D.
N.D.
N.D.
N.D.
phage
Bas22
+0.2
N.D.
N.D.
N.D.
N.D.
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