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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23785 and ECOLIN_RS23790 are separated by 263 nucleotides
ECOLIN_RS23790 and ECOLIN_RS23795 are separated by 111 nucleotides
ECOLIN_RS23795 and ECOLIN_RS23800 overlap by 25 nucleotides
ECOLIN_RS23800 and ECOLIN_RS23805 are separated by 0 nucleotides
ECOLIN_RS23785: ECOLIN_RS23785 - YjcZ-like family protein, at 4,795,075 to 4,795,953
_RS23785
ECOLIN_RS23790: ECOLIN_RS23790 - glycine betaine/L-proline transporter ProP, at 4,796,217 to 4,797,719
_RS23790
ECOLIN_RS23795: ECOLIN_RS23795 - LpxT activity modulator PmrR, at 4,797,831 to 4,797,920
_RS23795
ECOLIN_RS23800: ECOLIN_RS23800 - two-component system sensor histidine kinase PmrB, at 4,797,896 to 4,798,996
_RS23800
ECOLIN_RS23805: ECOLIN_RS23805 - two-component system response regulator BasR, at 4,798,997 to 4,799,665
_RS23805
Group
Condition
ECOLIN
_RS23785
ECOLIN
_RS23790
ECOLIN
_RS23795
ECOLIN
_RS23800
ECOLIN
_RS23805
carbon source
L-Rhamnose
-0.0
+0.0
-1.3
-0.4
+0.3
carbon source
D-Glucose
+0.0
+0.0
-1.7
+0.2
+0.1
no phage control
Control_Nissle
-0.3
-0.1
-0.3
-0.4
-0.1
phage
CEV1
+0.2
-0.4
-1.1
+0.0
+0.2
phage
K25
+0.0
-0.2
-0.5
-0.4
+0.1
phage
EV219
+0.2
-0.1
-0.4
+0.3
+0.1
no phage control
Control_Nissle
-0.2
-0.2
+0.7
+0.0
-0.0
phage
Bas48
-0.1
-0.2
+0.7
+0.0
+0.0
phage
Bas21
+0.1
-0.2
-0.6
+0.7
+0.5
phage
Bas52
-0.2
-0.1
+0.9
-0.1
+0.0
phage
Bas63
+0.0
-0.1
+0.8
-0.1
+0.0
phage
Bas52
-0.0
-0.1
+0.5
-0.1
+0.4
phage
RB68
-0.0
-0.1
+0.9
-0.2
+0.1
phage
Bas37
+0.2
-0.1
-0.1
+0.3
+0.4
phage
Phi92
+0.1
-0.2
+0.7
+0.2
-0.1
carbon source
L-Arabinose
-0.1
+0.1
+0.6
+0.1
+0.1
phage
JK38
+0.2
-0.1
-0.1
+0.5
+0.3
phage
Bas44
-0.1
-0.0
+0.7
-0.1
+0.4
phage
TP7
+0.1
+0.0
-0.2
+0.6
+0.4
phage
Bas37
+0.1
-0.1
+0.1
+0.5
+0.3
phage
TP7
+0.3
-0.1
-0.3
+0.6
+0.4
phage
JK38
+0.2
-0.1
+0.1
+0.6
+0.3
phage
Bas21
+0.1
-0.2
+0.0
+0.5
+0.5
phage
RB51
-0.1
-0.2
+1.3
+0.1
+0.2
phage
Bas38
+0.1
-0.1
+0.3
+0.4
+0.4
phage
Bas44
+0.1
-0.1
+0.7
+0.1
+0.4
phage
Bas45
+0.1
+0.1
+0.1
+0.4
+0.9
phage
Bas38
+0.1
-0.1
+0.5
+0.6
+0.4
phage
Bas22
+0.0
-0.0
+1.0
+0.2
+0.4
phage
P1vir
+0.1
+0.0
+0.8
+0.9
+1.2
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