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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23635 and ECOLIN_RS23640 overlap by 4 nucleotides
ECOLIN_RS23640 and ECOLIN_RS23645 overlap by 1 nucleotides
ECOLIN_RS23645 and ECOLIN_RS23650 are separated by 18 nucleotides
ECOLIN_RS23650 and ECOLIN_RS23655 are separated by 208 nucleotides
ECOLIN_RS23635: ECOLIN_RS23635 - multidrug efflux transporter outer membrane subunit MdtP, at 4,765,902 to 4,767,368
_RS23635
ECOLIN_RS23640: ECOLIN_RS23640 - multidrug efflux transporter permease subunit MdtO, at 4,767,365 to 4,769,416
_RS23640
ECOLIN_RS23645: ECOLIN_RS23645 - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 4,769,416 to 4,770,447
_RS23645
ECOLIN_RS23650: ECOLIN_RS23650 - YtcA family lipoprotein, at 4,770,466 to 4,770,741
_RS23650
ECOLIN_RS23655: ECOLIN_RS23655 - alkyl sulfatase YjcS, at 4,770,950 to 4,772,935
_RS23655
Group
Condition
ECOLIN
_RS23635
ECOLIN
_RS23640
ECOLIN
_RS23645
ECOLIN
_RS23650
ECOLIN
_RS23655
phage
RB51
+0.2
+0.2
-0.2
-3.0
+0.0
phage
Bas68
+0.2
+0.1
-0.1
-2.1
-0.0
carbon source
L-Rhamnose
-0.1
-0.0
-0.0
-1.4
-0.0
phage
Bas51
+0.1
+0.1
-0.3
-1.6
+0.1
phage
Bas45
-0.1
+0.0
-0.0
-1.3
+0.1
phage
K20
+0.0
+0.2
-0.2
-1.4
+0.0
phage
RB51
+0.4
+0.0
-0.4
-1.2
+0.0
phage
K25
-0.0
+0.1
+0.1
-1.4
+0.2
phage
Bas48
-0.0
+0.3
-0.1
-0.7
-0.1
phage
Bas04
-0.1
+0.3
-0.1
-0.4
-0.2
phage
Bas63
+0.1
+0.3
-0.0
-0.9
-0.0
phage
CEV1
+0.1
+0.2
+0.1
-0.9
-0.1
phage
Phi92
+0.1
+0.3
-0.1
-0.8
+0.0
phage
RB68
+0.1
+0.2
-0.2
-0.5
+0.1
phage
Bas27
+0.2
+0.2
+0.1
-0.5
-0.2
phage
Phi92
+0.3
+0.0
-0.5
+0.1
-0.1
carbon source
D-Glucose
-0.4
-0.0
-0.3
+0.9
+0.1
phage
Bas21
+0.1
+0.2
-0.2
+0.5
-0.1
phage
Bas52
+0.1
+0.2
-0.5
+0.6
+0.0
phage
TP7
+0.3
+0.1
-0.3
+0.6
-0.1
phage
Bas22
-0.2
+0.4
-0.2
+0.6
+0.1
carbon source
D-Glucose
+0.0
-0.1
-0.2
+1.0
-0.1
phage
Bas37
-0.0
+0.3
-0.4
+0.9
+0.1
phage
Bas68
+0.1
+0.2
-0.0
+0.7
+0.0
phage
JK16
+0.3
-0.0
-0.1
+0.9
-0.0
no phage control
Control_Nissle
+0.0
+0.3
-0.3
+1.0
+0.1
phage
P1vir
-0.0
-0.1
+0.2
+1.0
+0.0
phage
EV219
+0.2
+0.0
-0.3
+1.2
+0.0
phage
Bas48
+0.0
+0.3
-0.3
+1.1
+0.1
no phage control
Control_Nissle
+0.2
+0.2
-0.2
+1.1
+0.0
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