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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23580 and ECOLIN_RS23585 overlap by 4 nucleotides
ECOLIN_RS23585 and ECOLIN_RS23590 are separated by 342 nucleotides
ECOLIN_RS23590 and ECOLIN_RS23595 are separated by 1057 nucleotides
ECOLIN_RS23595 and ECOLIN_RS23600 are separated by 110 nucleotides
ECOLIN_RS23580: ECOLIN_RS23580 - heme lyase NrfEFG subunit NrfF, at 4,753,622 to 4,754,005
_RS23580
ECOLIN_RS23585: ECOLIN_RS23585 - heme lyase NrfEFG subunit NrfG, at 4,754,002 to 4,754,598
_RS23585
ECOLIN_RS23590: ECOLIN_RS23590 - glutamate/aspartate:proton symporter GltP, at 4,754,941 to 4,756,254
_RS23590
ECOLIN_RS23595: ECOLIN_RS23595 - Sel1 family TPR-like repeat protein YjcO, at 4,757,312 to 4,758,001
_RS23595
ECOLIN_RS23600: ECOLIN_RS23600 - ABC transporter ATP-binding protein, at 4,758,112 to 4,758,816
_RS23600
Group
Condition
ECOLIN
_RS23580
ECOLIN
_RS23585
ECOLIN
_RS23590
ECOLIN
_RS23595
ECOLIN
_RS23600
phage
TP7
+0.1
-0.2
-1.8
+0.5
-0.0
phage
EV219
+0.0
+0.0
-1.4
-0.1
-0.1
phage
JK38
-0.0
-0.2
-1.2
+0.1
-0.1
phage
Bas31
-0.2
-0.1
-0.8
-0.1
-0.1
phage
Bas21
-0.0
-0.2
-1.3
+0.3
-0.1
phage
TP7
+0.1
-0.0
-1.3
+0.2
-0.1
phage
Bas21
-0.1
-0.0
-1.1
+0.2
-0.0
phage
Bas37
+0.1
-0.1
-1.1
+0.4
-0.3
phage
EV219
+0.2
-0.2
-1.0
+0.3
-0.1
phage
Bas38
+0.2
-0.0
-1.3
+0.3
+0.1
carbon source
L-Arabinose
-0.3
-0.0
-0.2
-0.2
-0.1
phage
Bas38
-0.0
-0.0
-1.0
+0.3
-0.1
phage
Bas31
-0.1
-0.2
-0.7
+0.3
-0.2
phage
Bas63
+0.0
-0.1
-0.0
-0.3
-0.4
phage
Bas22
-0.2
+0.0
-0.7
+0.3
-0.1
phage
Bas45
+0.0
-0.2
-0.7
+0.3
-0.1
phage
Bas37
+0.0
-0.0
-0.9
+0.3
-0.1
phage
JK38
-0.1
+0.1
-1.1
+0.4
-0.0
phage
Bas27
-0.1
-0.1
-0.5
+0.3
-0.1
phage
Bas27
+0.0
-0.2
-0.5
+0.2
+0.1
phage
K25
-0.3
-0.2
-0.1
+0.3
-0.0
phage
CEV1
+0.1
+0.0
-0.6
+0.2
-0.0
phage
Bas22
+0.1
+0.1
-0.7
+0.3
-0.0
phage
K25
-0.2
+0.2
-0.1
+0.3
-0.3
carbon source
Casamino-acids
+0.2
+0.2
-0.3
-0.1
+0.1
no phage control
Control_Nissle
+0.3
-0.2
-0.0
+0.2
+0.1
phage
Bas52
+0.0
+0.1
-0.3
+0.5
-0.0
phage
Bas52
+0.2
+0.2
-0.2
+0.2
+0.1
phage
Bas44
+0.3
-0.1
+0.0
+0.3
+0.1
phage
Bas44
+0.2
+0.2
+0.2
+0.3
+0.2
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