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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23550 and ECOLIN_RS23555 are separated by 391 nucleotides
ECOLIN_RS23555 and ECOLIN_RS23560 are separated by 44 nucleotides
ECOLIN_RS23560 and ECOLIN_RS23565 overlap by 4 nucleotides
ECOLIN_RS23565 and ECOLIN_RS23570 overlap by 4 nucleotides
ECOLIN_RS23550: ECOLIN_RS23550 - acetate--CoA ligase, at 4,745,873 to 4,747,831
_RS23550
ECOLIN_RS23555: ECOLIN_RS23555 - ammonia-forming nitrite reductase cytochrome c552 subunit, at 4,748,223 to 4,749,659
_RS23555
ECOLIN_RS23560: ECOLIN_RS23560 - cytochrome c nitrite reductase pentaheme subunit, at 4,749,704 to 4,750,270
_RS23560
ECOLIN_RS23565: ECOLIN_RS23565 - cytochrome c nitrite reductase Fe-S protein, at 4,750,267 to 4,750,938
_RS23565
ECOLIN_RS23570: ECOLIN_RS23570 - cytochrome c nitrite reductase subunit NrfD, at 4,750,935 to 4,751,891
_RS23570
Group
Condition
ECOLIN
_RS23550
ECOLIN
_RS23555
ECOLIN
_RS23560
ECOLIN
_RS23565
ECOLIN
_RS23570
carbon source
L-Rhamnose
-0.9
+0.0
+0.4
-0.7
-0.2
phage
K20
-0.0
-0.2
+0.0
-1.1
+0.1
phage
Bas63
-0.0
-0.1
+0.0
-0.9
+0.2
phage
RB68
-0.1
-0.1
+0.2
-1.2
+0.3
phage
Bas52
-0.1
-0.1
-0.1
-0.5
+0.2
phage
JK16
+0.1
+0.2
-0.1
-0.7
+0.0
phage
RB51
-0.1
-0.0
+0.1
-0.5
-0.1
carbon source
L-Rhamnose
-0.6
-0.1
+0.2
+0.2
-0.2
phage
Bas10
+0.1
+0.1
-0.0
-0.5
-0.1
no phage control
Control_Nissle
-0.1
-0.2
+0.1
-0.4
+0.2
phage
Bas22
+0.0
+0.0
+0.1
-0.5
+0.1
phage
EV219
-0.1
+0.1
+0.2
-0.4
-0.1
phage
Bas48
-0.1
-0.0
+0.2
-0.5
+0.1
phage
Bas52
-0.2
+0.1
+0.3
-0.1
-0.3
phage
Bas44
-0.1
+0.0
+0.2
-0.5
+0.2
phage
TP7
-0.2
-0.1
+0.1
+0.3
+0.1
carbon source
L-Arabinose
+0.0
+0.1
-0.3
+0.3
+0.1
phage
JK16
+0.0
-0.0
+0.4
-0.3
+0.1
carbon source
D-Glucose
-0.0
+0.1
-0.2
+0.6
-0.2
phage
K20
+0.0
+0.1
+0.2
-0.3
+0.3
phage
RB51
-0.1
-0.3
+0.4
+0.5
+0.0
phage
CEV1
-0.1
-0.1
+0.1
+0.6
-0.0
phage
Bas37
+0.1
+0.2
+0.5
-0.3
+0.2
phage
CEV1
+0.1
-0.0
+0.2
+0.2
+0.2
phage
Bas48
-0.1
+0.2
+0.6
-0.0
-0.0
phage
Bas21
+0.1
+0.3
-0.2
+0.4
+0.2
phage
Bas05
+0.1
+0.1
+0.1
+0.2
+0.2
phage
Phi92
+0.1
+0.1
+0.5
+0.0
+0.1
no phage control
Control_Nissle
+0.1
-0.0
+0.2
+0.4
+0.2
phage
Bas37
+0.1
+0.1
+0.3
+0.4
+0.3
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