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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23525 and ECOLIN_RS23530 are separated by 103 nucleotides
ECOLIN_RS23530 and ECOLIN_RS23535 overlap by 8 nucleotides
ECOLIN_RS23535 and ECOLIN_RS23540 are separated by 38 nucleotides
ECOLIN_RS23540 and ECOLIN_RS23545 overlap by 4 nucleotides
ECOLIN_RS23525: ECOLIN_RS23525 - LysR family transcriptional regulator, at 4,741,400 to 4,742,284
_RS23525
ECOLIN_RS23530: ECOLIN_RS23530 - CidA/LrgA family protein, at 4,742,388 to 4,742,798
_RS23530
ECOLIN_RS23535: ECOLIN_RS23535 - LrgB family protein, at 4,742,791 to 4,743,480
_RS23535
ECOLIN_RS23540: ECOLIN_RS23540 - cation/acetate symporter ActP, at 4,743,519 to 4,745,168
_RS23540
ECOLIN_RS23545: ECOLIN_RS23545 - DUF485 domain-containing protein, at 4,745,165 to 4,745,479
_RS23545
Group
Condition
ECOLIN
_RS23525
ECOLIN
_RS23530
ECOLIN
_RS23535
ECOLIN
_RS23540
ECOLIN
_RS23545
carbon source
L-Rhamnose
-0.2
-0.5
+0.0
-0.4
-0.6
carbon source
Casamino-acids
+0.0
-0.0
-0.3
+0.0
-0.6
phage
Bas38
-0.1
+0.0
-0.3
+0.0
-0.4
phage
TP7
-0.1
+0.0
-0.1
-0.0
-0.5
carbon source
D-Glucose
-0.0
-0.0
-0.6
-0.2
+0.1
phage
Bas38
+0.1
-0.1
-0.5
-0.1
-0.1
phage
P1vir
+0.0
-0.1
-0.2
-0.2
-0.2
phage
JK16
-0.1
+0.0
-0.3
+0.1
-0.4
phage
Bas48
+0.2
-0.1
-0.3
+0.1
-0.4
phage
Bas10
+0.1
+0.1
-0.4
+0.0
-0.3
phage
Bas37
+0.1
+0.0
-0.3
+0.1
-0.4
carbon source
L-Arabinose
+0.1
+0.0
-0.2
-0.1
-0.2
phage
Bas63
+0.0
-0.3
+0.1
-0.0
-0.3
carbon source
L-Arabinose
+0.1
+0.1
-0.3
-0.1
-0.1
carbon source
L-Rhamnose
-0.3
+0.6
-0.7
-0.3
+0.4
phage
Bas52
+0.1
+0.1
-0.3
+0.1
-0.2
phage
Bas45
+0.0
+0.2
+0.0
-0.2
-0.2
phage
Bas48
+0.2
+0.1
-0.1
-0.1
-0.2
no phage control
Control_Nissle
+0.1
+0.1
+0.1
-0.1
-0.2
carbon source
Casamino-acids
-0.0
+0.2
-0.0
+0.1
-0.2
phage
Bas22
+0.2
+0.3
-0.1
+0.0
-0.3
phage
Bas05
+0.1
-0.0
-0.1
-0.1
+0.3
phage
Bas68
+0.2
-0.2
+0.1
+0.1
-0.1
phage
Bas05
+0.2
-0.1
-0.1
-0.1
+0.4
carbon source
D-Glucose
+0.0
+0.3
-0.3
-0.0
+0.3
phage
Bas27
+0.1
+0.2
-0.2
-0.0
+0.1
phage
Bas04
+0.0
+0.1
-0.2
-0.0
+0.4
phage
Bas22
+0.2
-0.1
+0.1
-0.0
+0.2
phage
K25
+0.3
+0.1
+0.3
+0.0
-0.1
phage
Phi92
+0.1
+0.2
+0.2
+0.2
+0.0
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