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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23495 and ECOLIN_RS23500 are separated by 428 nucleotides
ECOLIN_RS23500 and ECOLIN_RS23505 are separated by 35 nucleotides
ECOLIN_RS23505 and ECOLIN_RS23510 are separated by 85 nucleotides
ECOLIN_RS23510 and ECOLIN_RS23515 are separated by 547 nucleotides
ECOLIN_RS23495: ECOLIN_RS23495 - YjcB family protein, at 4,734,495 to 4,734,776
_RS23495
ECOLIN_RS23500: ECOLIN_RS23500 - c-di-GMP phosphodiesterase PdeC, at 4,735,205 to 4,736,758
_RS23500
ECOLIN_RS23505: ECOLIN_RS23505 - superoxide response transcriptional regulator SoxS, at 4,736,794 to 4,737,117
_RS23505
ECOLIN_RS23510: ECOLIN_RS23510 - redox-sensitive transcriptional activator SoxR, at 4,737,203 to 4,737,667
_RS23510
ECOLIN_RS23515: ECOLIN_RS23515 - guanine/hypoxanthine transporter GhxP, at 4,738,215 to 4,739,564
_RS23515
Group
Condition
ECOLIN
_RS23495
ECOLIN
_RS23500
ECOLIN
_RS23505
ECOLIN
_RS23510
ECOLIN
_RS23515
carbon source
D-Glucose
-0.3
-0.1
N.D.
-0.6
-0.3
phage
Bas10
-0.4
-0.1
N.D.
-0.2
-0.1
carbon source
L-Rhamnose
+0.1
+0.1
N.D.
-0.9
-0.1
phage
K25
+0.0
-0.0
N.D.
-0.4
-0.2
phage
JK38
-0.1
-0.2
N.D.
-0.2
+0.0
phage
Bas45
-0.3
-0.2
N.D.
-0.1
+0.2
phage
JK16
-0.1
-0.2
N.D.
-0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.0
-0.1
N.D.
-0.3
+0.1
phage
RB51
-0.2
+0.1
N.D.
-0.2
+0.0
phage
Bas22
+0.2
-0.1
N.D.
-0.2
-0.1
no phage control
Control_Nissle
+0.3
-0.0
N.D.
-0.3
-0.1
phage
K20
-0.1
-0.0
N.D.
-0.3
+0.2
no phage control
Control_Nissle
-0.0
+0.1
N.D.
-0.3
+0.1
phage
Bas63
+0.1
+0.2
N.D.
-0.2
-0.2
phage
Bas21
-0.1
-0.2
N.D.
+0.3
-0.1
phage
Bas21
-0.2
-0.1
N.D.
+0.2
+0.1
phage
K20
+0.2
+0.2
N.D.
-0.2
-0.2
phage
CEV1
-0.4
+0.1
N.D.
+0.5
-0.0
phage
RB68
+0.1
-0.0
N.D.
+0.2
-0.1
carbon source
Casamino-acids
-0.0
+0.2
N.D.
+0.1
-0.2
phage
Bas27
-0.0
-0.2
N.D.
+0.3
+0.1
carbon source
Casamino-acids
+0.0
+0.1
N.D.
+0.3
-0.2
phage
Bas48
+0.2
+0.1
N.D.
+0.0
-0.1
phage
Bas63
+0.4
+0.1
N.D.
-0.2
-0.0
phage
Bas37
-0.1
-0.1
N.D.
+0.3
+0.1
phage
Bas27
-0.1
+0.0
N.D.
+0.3
+0.2
phage
Bas04
-0.1
-0.0
N.D.
+0.4
+0.1
phage
Bas44
+0.1
+0.1
N.D.
+0.2
-0.0
phage
Bas38
-0.1
+0.0
N.D.
+0.3
+0.2
phage
P1vir
+0.5
+0.0
N.D.
+0.0
-0.0
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