Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS23490 and ECOLIN_RS23495 are separated by 98 nucleotidesECOLIN_RS23495 and ECOLIN_RS23500 are separated by 428 nucleotidesECOLIN_RS23500 and ECOLIN_RS23505 are separated by 35 nucleotidesECOLIN_RS23505 and ECOLIN_RS23510 are separated by 85 nucleotides ECOLIN_RS23490: ECOLIN_RS23490 - single-stranded DNA-binding protein SSB1, at 4,733,860 to 4,734,396 _RS23490 ECOLIN_RS23495: ECOLIN_RS23495 - YjcB family protein, at 4,734,495 to 4,734,776 _RS23495 ECOLIN_RS23500: ECOLIN_RS23500 - c-di-GMP phosphodiesterase PdeC, at 4,735,205 to 4,736,758 _RS23500 ECOLIN_RS23505: ECOLIN_RS23505 - superoxide response transcriptional regulator SoxS, at 4,736,794 to 4,737,117 _RS23505 ECOLIN_RS23510: ECOLIN_RS23510 - redox-sensitive transcriptional activator SoxR, at 4,737,203 to 4,737,667 _RS23510
Group Condition ECOLIN_RS23490 ECOLIN_RS23495 ECOLIN_RS23500 ECOLIN_RS23505 ECOLIN_RS23510
carbon source D-Glucose N.D. -0.3 -0.1 N.D. -0.6
phage Bas10 N.D. -0.4 -0.1 N.D. -0.2
phage Bas45 N.D. -0.3 -0.2 N.D. -0.1
carbon source L-Rhamnose N.D. +0.1 +0.1 N.D. -0.9
phage JK38 N.D. -0.1 -0.2 N.D. -0.2
carbon source Sodium-DL-Lactate N.D. -0.0 -0.1 N.D. -0.3
phage JK16 N.D. -0.1 -0.2 N.D. -0.1
phage K25 N.D. +0.0 -0.0 N.D. -0.4
phage RB51 N.D. -0.2 +0.1 N.D. -0.2
phage Bas22 N.D. +0.2 -0.1 N.D. -0.2
phage Bas51 N.D. +0.0 +0.1 N.D. -0.3
no phage control Control_Nissle N.D. -0.0 +0.1 N.D. -0.3
phage Bas21 N.D. -0.2 -0.1 N.D. +0.2
phage CEV1 N.D. -0.2 +0.1 N.D. +0.1
no phage control Control_Nissle N.D. +0.3 -0.0 N.D. -0.3
carbon source L-Arabinose N.D. -0.1 +0.2 N.D. -0.1
phage Bas21 N.D. -0.1 -0.2 N.D. +0.3
phage Bas27 N.D. -0.0 -0.2 N.D. +0.3
phage Bas63 N.D. +0.1 +0.2 N.D. -0.2
phage K20 N.D. +0.2 +0.2 N.D. -0.2
phage CEV1 N.D. -0.4 +0.1 N.D. +0.5
phage Bas37 N.D. -0.1 -0.1 N.D. +0.3
phage Bas27 N.D. -0.1 +0.0 N.D. +0.3
phage Bas38 N.D. -0.1 +0.0 N.D. +0.3
phage Bas63 N.D. +0.4 +0.1 N.D. -0.2
phage Bas04 N.D. -0.1 -0.0 N.D. +0.4
phage K25 N.D. +0.2 +0.2 N.D. -0.0
carbon source Casamino-acids N.D. +0.0 +0.1 N.D. +0.3
phage Bas44 N.D. +0.1 +0.1 N.D. +0.2
phage P1vir N.D. +0.5 +0.0 N.D. +0.0
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