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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23470 and ECOLIN_RS23475 are separated by 110 nucleotides
ECOLIN_RS23475 and ECOLIN_RS23480 are separated by 3 nucleotides
ECOLIN_RS23480 and ECOLIN_RS23485 are separated by 34 nucleotides
ECOLIN_RS23485 and ECOLIN_RS23490 are separated by 254 nucleotides
ECOLIN_RS23470: ECOLIN_RS23470 - acid phosphatase AphA, at 4,729,148 to 4,729,861
_RS23470
ECOLIN_RS23475: ECOLIN_RS23475 - secondary thiamine-phosphate synthase enzyme YjbQ, at 4,729,972 to 4,730,388
_RS23475
ECOLIN_RS23480: ECOLIN_RS23480 - MmcQ/YjbR family DNA-binding protein, at 4,730,392 to 4,730,748
_RS23480
ECOLIN_RS23485: ECOLIN_RS23485 - excinuclease ABC subunit UvrA, at 4,730,783 to 4,733,605
_RS23485
ECOLIN_RS23490: ECOLIN_RS23490 - single-stranded DNA-binding protein SSB1, at 4,733,860 to 4,734,396
_RS23490
Group
Condition
ECOLIN
_RS23470
ECOLIN
_RS23475
ECOLIN
_RS23480
ECOLIN
_RS23485
ECOLIN
_RS23490
phage
Bas45
-0.6
+0.2
-0.5
-0.3
N.D.
phage
Bas63
-0.1
-0.8
-0.1
-0.1
N.D.
phage
Bas04
-0.2
-0.7
-0.1
+0.0
N.D.
phage
K25
-0.2
-0.5
-0.4
+0.0
N.D.
phage
Bas63
-0.2
-0.2
-0.3
-0.0
N.D.
phage
K20
-0.4
-0.7
+0.3
+0.1
N.D.
phage
Phi92
-0.2
-0.4
-0.1
-0.1
N.D.
phage
Bas51
-0.3
-0.1
-0.3
+0.1
N.D.
phage
Bas44
+0.2
-0.5
-0.2
+0.0
N.D.
phage
Bas52
+0.2
-0.4
-0.2
-0.0
N.D.
phage
Bas22
-0.3
-0.2
+0.1
+0.0
N.D.
phage
JK16
+0.2
-0.5
-0.0
+0.0
N.D.
phage
Bas04
+0.2
-0.3
-0.2
+0.0
N.D.
phage
Bas27
+0.1
+0.1
-0.4
+0.1
N.D.
carbon source
L-Rhamnose
-0.2
-0.2
+0.4
-0.1
N.D.
phage
Bas52
+0.3
+0.1
-0.4
+0.1
N.D.
phage
Phi92
-0.3
+0.4
-0.0
-0.1
N.D.
phage
Bas48
+0.1
+0.5
-0.6
+0.0
N.D.
phage
TP7
+0.4
-0.3
-0.1
+0.0
N.D.
phage
Bas21
+0.2
+0.2
-0.3
-0.0
N.D.
carbon source
L-Arabinose
-0.1
+0.5
-0.3
+0.1
N.D.
carbon source
D-Glucose
+0.1
+0.2
+0.3
-0.2
N.D.
phage
Bas38
+0.6
-0.3
+0.1
+0.0
N.D.
phage
Bas37
+0.2
+0.3
-0.2
+0.1
N.D.
carbon source
L-Arabinose
+0.1
+0.4
+0.1
-0.1
N.D.
phage
Bas37
+0.2
-0.2
+0.2
+0.2
N.D.
phage
JK38
+0.2
+0.3
+0.1
+0.2
N.D.
phage
P1vir
+0.0
+0.8
+0.1
-0.2
N.D.
phage
Bas38
+0.6
-0.1
+0.1
+0.0
N.D.
carbon source
L-Rhamnose
+0.2
+0.9
+0.3
-0.2
N.D.
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