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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23460 and ECOLIN_RS23465 overlap by 8 nucleotides
ECOLIN_RS23465 and ECOLIN_RS23470 are separated by 276 nucleotides
ECOLIN_RS23470 and ECOLIN_RS23475 are separated by 110 nucleotides
ECOLIN_RS23475 and ECOLIN_RS23480 are separated by 3 nucleotides
ECOLIN_RS23460: ECOLIN_RS23460 - sigma-54 dependent transcriptional regulator, at 4,725,700 to 4,727,058
_RS23460
ECOLIN_RS23465: ECOLIN_RS23465 - ATP-binding protein, at 4,727,051 to 4,728,871
_RS23465
ECOLIN_RS23470: ECOLIN_RS23470 - acid phosphatase AphA, at 4,729,148 to 4,729,861
_RS23470
ECOLIN_RS23475: ECOLIN_RS23475 - secondary thiamine-phosphate synthase enzyme YjbQ, at 4,729,972 to 4,730,388
_RS23475
ECOLIN_RS23480: ECOLIN_RS23480 - MmcQ/YjbR family DNA-binding protein, at 4,730,392 to 4,730,748
_RS23480
Group
Condition
ECOLIN
_RS23460
ECOLIN
_RS23465
ECOLIN
_RS23470
ECOLIN
_RS23475
ECOLIN
_RS23480
phage
Bas45
-0.4
-0.1
-0.6
+0.2
-0.5
phage
Bas44
-0.5
-0.1
+0.2
-0.5
-0.2
carbon source
L-Rhamnose
-1.2
+0.1
-0.2
-0.2
+0.4
phage
TP7
-0.6
-0.2
+0.4
-0.3
-0.1
carbon source
L-Arabinose
-0.8
+0.2
-0.1
+0.5
-0.3
phage
K25
+0.6
+0.1
-0.2
-0.5
-0.4
phage
Bas63
+1.1
-0.3
-0.2
-0.2
-0.3
phage
K20
+1.3
-0.2
-0.4
-0.7
+0.3
phage
Bas04
+1.4
+0.0
-0.2
-0.7
-0.1
phage
Bas52
+0.7
-0.2
+0.3
+0.1
-0.4
phage
Phi92
+1.1
-0.1
-0.2
-0.4
-0.1
phage
Bas48
+0.6
-0.2
+0.1
+0.5
-0.6
phage
Bas63
+1.7
-0.0
-0.1
-0.8
-0.1
phage
Bas52
+1.1
-0.0
+0.2
-0.4
-0.2
phage
Phi92
+0.8
-0.2
-0.3
+0.4
-0.0
phage
Bas51
+1.3
+0.2
-0.3
-0.1
-0.3
phage
Bas04
+1.5
-0.3
+0.2
-0.3
-0.2
phage
Bas37
+1.2
-0.5
+0.2
+0.3
-0.2
phage
Bas68
+1.5
-0.1
-0.2
+0.0
-0.2
phage
Bas68
+1.5
+0.0
-0.3
-0.1
-0.0
phage
Bas31
+1.2
-0.1
+0.2
+0.1
-0.2
phage
Bas22
+1.0
+0.1
-0.1
+0.3
-0.1
phage
Bas37
+1.0
-0.1
+0.2
-0.2
+0.2
phage
K20
+1.5
+0.1
-0.1
+0.1
-0.2
no phage control
Control_Nissle
+2.0
-0.0
+0.1
-0.0
-0.4
phage
Bas22
+2.0
+0.1
-0.3
-0.2
+0.1
phage
K25
+1.1
+0.3
+0.2
+0.1
+0.1
no phage control
Control_Nissle
+2.4
-0.1
-0.0
-0.0
-0.1
phage
RB68
+1.9
-0.1
+0.1
+0.3
-0.0
carbon source
L-Rhamnose
+0.7
+0.5
+0.2
+0.9
+0.3
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