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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23430 and ECOLIN_RS23435 are separated by 11 nucleotides
ECOLIN_RS23435 and ECOLIN_RS23440 are separated by 21 nucleotides
ECOLIN_RS23440 and ECOLIN_RS23445 are separated by 12 nucleotides
ECOLIN_RS23445 and ECOLIN_RS23450 are separated by 211 nucleotides
ECOLIN_RS23430: ECOLIN_RS23430 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 4,718,255 to 4,719,409
_RS23430
ECOLIN_RS23435: ECOLIN_RS23435 - dihydrolipoyl dehydrogenase, at 4,719,421 to 4,720,839
_RS23435
ECOLIN_RS23440: ECOLIN_RS23440 - ADP-forming succinate--CoA ligase subunit beta, at 4,720,861 to 4,722,030
_RS23440
ECOLIN_RS23445: ECOLIN_RS23445 - succinate--CoA ligase subunit alpha, at 4,722,043 to 4,722,915
_RS23445
ECOLIN_RS23450: ECOLIN_RS23450 - DASS family sodium-coupled anion symporter, at 4,723,127 to 4,724,626
_RS23450
Group
Condition
ECOLIN
_RS23430
ECOLIN
_RS23435
ECOLIN
_RS23440
ECOLIN
_RS23445
ECOLIN
_RS23450
phage
Bas45
-0.1
-0.0
-0.2
-0.3
-0.1
phage
Bas22
-0.2
-0.0
-0.2
-0.2
-0.2
phage
K20
-0.0
-0.1
-0.1
-0.2
-0.2
carbon source
L-Rhamnose
-0.1
-0.2
-0.2
+0.1
-0.3
phage
Bas44
-0.0
-0.1
-0.3
-0.4
+0.1
phage
CEV1
-0.2
+0.1
+0.0
-0.6
+0.1
phage
CEV1
-0.2
-0.1
-0.1
-0.0
+0.0
phage
Bas10
-0.1
+0.0
-0.2
-0.2
+0.1
phage
RB51
+0.2
-0.1
-0.1
-0.5
+0.2
phage
Bas22
+0.1
-0.0
-0.3
-0.0
-0.1
no phage control
Control_Nissle
+0.3
-0.3
+0.0
-0.2
+0.0
no phage control
Control_Nissle
+0.2
+0.1
-0.1
-0.4
+0.0
phage
RB51
+0.1
-0.1
-0.0
-0.1
+0.1
phage
TP7
-0.2
+0.0
+0.1
-0.0
-0.1
carbon source
D-Glucose
+0.2
+0.0
-0.2
-0.2
+0.0
phage
Phi92
-0.1
+0.2
-0.2
-0.0
+0.0
carbon source
Casamino-acids
+0.1
+0.0
+0.1
-0.3
-0.0
phage
Bas51
-0.1
-0.1
+0.2
-0.1
+0.1
phage
Bas27
-0.0
+0.1
+0.1
+0.1
-0.2
phage
JK16
-0.0
-0.1
+0.2
-0.2
+0.0
phage
Bas68
+0.2
+0.1
-0.2
-0.0
-0.0
phage
Bas68
+0.3
-0.1
-0.2
-0.0
-0.0
carbon source
L-Rhamnose
+0.0
+0.1
+0.2
-0.3
-0.1
phage
Bas37
+0.2
-0.1
+0.1
-0.1
-0.1
phage
Bas31
-0.2
+0.1
-0.0
+0.1
-0.0
phage
Bas04
-0.1
+0.3
-0.1
+0.1
+0.1
phage
Bas21
-0.1
+0.0
+0.1
+0.3
+0.1
carbon source
L-Arabinose
+0.3
+0.1
+0.2
+0.1
-0.1
carbon source
D-Glucose
+0.2
+0.1
+0.2
-0.0
+0.0
phage
Bas37
+0.0
+0.1
+0.1
+0.3
+0.1
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ECOLIN_RS23440
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