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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS23160 and ECOLIN_RS23165 are separated by 59 nucleotides
ECOLIN_RS23165 and ECOLIN_RS23170 are separated by 42 nucleotides
ECOLIN_RS23170 and ECOLIN_RS23175 are separated by 170 nucleotides
ECOLIN_RS23175 and ECOLIN_RS23180 are separated by 89 nucleotides
ECOLIN_RS23160: ECOLIN_RS23160 - methionine synthase, at 4,659,756 to 4,663,439
_RS23160
ECOLIN_RS23165: ECOLIN_RS23165 - hypothetical protein, at 4,663,499 to 4,663,819
_RS23165
ECOLIN_RS23170: ECOLIN_RS23170 - hypothetical protein, at 4,663,862 to 4,664,311
_RS23170
ECOLIN_RS23175: ECOLIN_RS23175 - Na/Pi cotransporter family protein, at 4,664,482 to 4,666,113
_RS23175
ECOLIN_RS23180: ECOLIN_RS23180 - dipeptidase PepE, at 4,666,203 to 4,666,892
_RS23180
Group
Condition
ECOLIN
_RS23160
ECOLIN
_RS23165
ECOLIN
_RS23170
ECOLIN
_RS23175
ECOLIN
_RS23180
carbon source
Sodium-DL-Lactate
-0.2
-0.2
-0.5
-0.1
-0.1
phage
P1vir
-0.0
-0.6
-0.4
-0.0
-0.1
phage
RB51
-0.1
-1.1
-0.1
-0.1
+0.2
phage
Bas44
-0.2
-0.0
-0.3
-0.1
-0.2
carbon source
L-Rhamnose
+0.1
-1.1
+0.4
-0.3
-0.0
phage
Bas44
-0.2
-0.5
-0.1
-0.2
+0.1
phage
Bas04
-0.0
-0.4
-0.3
-0.2
+0.0
phage
Bas45
-0.2
-0.1
-0.5
+0.0
+0.1
phage
Bas38
-0.2
+0.3
-0.3
-0.0
-0.3
carbon source
D-Glucose
-0.4
-0.6
+0.7
+0.0
-0.3
phage
Bas37
+0.0
-0.0
-0.5
+0.2
-0.3
phage
Bas21
+0.0
+0.2
-0.6
-0.0
-0.2
phage
Bas63
+0.0
-1.1
+0.6
-0.3
+0.2
no phage control
Control_Nissle
+0.0
-0.5
-0.2
-0.1
+0.4
carbon source
Sodium-DL-Lactate
-0.2
+0.3
-0.4
+0.0
-0.1
phage
Bas27
-0.1
+0.2
-0.4
-0.2
-0.0
phage
Bas05
+0.0
+0.6
-0.7
-0.0
-0.1
phage
Phi92
+0.0
+0.3
-0.3
-0.4
+0.2
phage
Bas10
-0.0
+0.4
-0.3
-0.0
+0.0
phage
Bas52
+0.1
-0.4
+0.3
+0.0
+0.1
phage
RB51
-0.1
-0.3
+0.3
+0.0
+0.3
phage
Phi92
-0.1
+0.6
-0.2
-0.2
+0.1
carbon source
L-Arabinose
-0.3
+0.2
+1.0
-0.1
-0.2
phage
CEV1
-0.2
+0.4
+0.4
+0.0
-0.1
carbon source
L-Arabinose
-0.3
+0.1
+0.8
-0.1
+0.0
phage
K20
-0.0
-0.1
+0.5
+0.1
+0.2
carbon source
D-Glucose
-0.3
+0.2
+1.0
-0.1
-0.1
phage
Bas22
+0.0
-0.2
+0.7
+0.1
+0.5
carbon source
L-Rhamnose
-0.0
+0.2
+1.5
-0.1
-0.4
phage
RB68
-0.1
+0.5
+0.8
-0.0
+0.2
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