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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS22830 and ECOLIN_RS22835 are separated by 182 nucleotides
ECOLIN_RS22835 and ECOLIN_RS22840 are separated by 301 nucleotides
ECOLIN_RS22840 and ECOLIN_RS22845 are separated by 153 nucleotides
ECOLIN_RS22845 and ECOLIN_RS22850 are separated by 7 nucleotides
ECOLIN_RS22830: ECOLIN_RS22830 - phosphoethanolamine transferase CptA, at 4,583,301 to 4,585,034
_RS22830
ECOLIN_RS22835: ECOLIN_RS22835 - phosphoenolpyruvate carboxylase, at 4,585,217 to 4,587,868
_RS22835
ECOLIN_RS22840: ECOLIN_RS22840 - acetylornithine deacetylase, at 4,588,170 to 4,589,321
_RS22840
ECOLIN_RS22845: ECOLIN_RS22845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,589,475 to 4,590,479
_RS22845
ECOLIN_RS22850: ECOLIN_RS22850 - acetylglutamate kinase, at 4,590,487 to 4,591,263
_RS22850
Group
Condition
ECOLIN
_RS22830
ECOLIN
_RS22835
ECOLIN
_RS22840
ECOLIN
_RS22845
ECOLIN
_RS22850
carbon source
Sodium-DL-Lactate
-0.1
-3.1
-2.2
-2.9
-2.7
carbon source
Sodium-DL-Lactate
-0.1
-2.8
-2.4
-2.8
-2.7
carbon source
D-Glucose
-0.1
-0.6
-1.7
-2.1
-2.3
carbon source
L-Rhamnose
-0.1
-1.6
-1.6
-1.3
-1.7
carbon source
D-Glucose
-0.0
-0.5
-1.6
-1.6
-2.2
carbon source
L-Arabinose
-0.0
+0.4
-1.5
-1.9
-1.6
carbon source
L-Rhamnose
-0.0
-0.6
-0.7
-0.9
-0.6
carbon source
L-Arabinose
+0.0
+1.3
-0.8
-0.7
-0.8
phage
EV219
-0.2
-0.1
+0.1
-0.3
+0.1
phage
Bas38
+0.3
-0.4
-0.2
+0.1
+0.0
phage
Bas38
+0.3
-0.3
-0.1
-0.1
+0.1
phage
Bas45
-0.2
+0.0
+0.2
-0.1
+0.1
phage
Bas04
-0.1
-0.1
-0.1
+0.4
-0.0
phage
Bas21
+0.2
-0.2
-0.1
+0.4
+0.0
phage
TP7
+0.6
-0.4
+0.1
-0.0
+0.1
phage
Bas04
-0.0
-0.1
-0.0
+0.6
-0.0
phage
Bas68
-0.1
+0.1
+0.1
+0.4
+0.0
phage
Bas63
+0.1
+0.1
+0.2
+0.2
-0.1
phage
TP7
+0.5
-0.1
-0.0
+0.1
+0.0
phage
JK38
+0.3
-0.1
-0.1
+0.2
+0.1
phage
Bas10
-0.0
-0.1
+0.1
+0.6
-0.0
phage
K20
-0.1
+0.3
+0.1
+0.2
-0.0
phage
Bas63
+0.1
-0.0
-0.0
+0.5
+0.0
phage
Bas22
-0.0
-0.0
+0.1
+0.6
+0.0
phage
K20
+0.1
+0.1
+0.2
+0.4
-0.2
phage
Bas44
+0.0
+0.2
+0.2
+0.2
+0.1
phage
RB68
-0.0
+0.0
+0.2
+0.5
+0.1
phage
Bas44
+0.2
+0.2
+0.2
+0.1
+0.2
phage
P1vir
+1.7
+0.1
-0.1
-0.4
-0.0
phage
Bas37
+0.1
-0.1
-0.0
+1.5
+0.1
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