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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS22580 and ECOLIN_RS22585 are separated by 100 nucleotides
ECOLIN_RS22585 and ECOLIN_RS22590 are separated by 211 nucleotides
ECOLIN_RS22590 and ECOLIN_RS22595 are separated by 26 nucleotides
ECOLIN_RS22595 and ECOLIN_RS22600 are separated by 4 nucleotides
ECOLIN_RS22580: ECOLIN_RS22580 - DUF1454 family protein, at 4,534,412 to 4,535,011
_RS22580
ECOLIN_RS22585: ECOLIN_RS22585 - DUF805 domain-containing protein, at 4,535,112 to 4,535,552
_RS22585
ECOLIN_RS22590: ECOLIN_RS22590 - DUF406 domain-containing protein, at 4,535,764 to 4,536,063
_RS22590
ECOLIN_RS22595: ECOLIN_RS22595 - universal stress protein UspD, at 4,536,090 to 4,536,518
_RS22595
ECOLIN_RS22600: ECOLIN_RS22600 - ferredoxin--NADP(+) reductase, at 4,536,523 to 4,537,269
_RS22600
Group
Condition
ECOLIN
_RS22580
ECOLIN
_RS22585
ECOLIN
_RS22590
ECOLIN
_RS22595
ECOLIN
_RS22600
phage
TP7
-1.8
N.D.
-0.3
-0.2
-0.1
phage
Bas21
-1.3
N.D.
-0.3
-0.3
-0.1
phage
EV219
-1.8
N.D.
-0.5
+0.4
-0.0
phage
EV219
-1.5
N.D.
-0.1
+0.1
-0.2
phage
Bas38
-1.2
N.D.
-0.1
-0.4
-0.0
phage
Bas37
-1.3
N.D.
-0.1
-0.1
-0.0
phage
Bas37
-1.2
N.D.
-0.1
-0.1
-0.1
phage
Bas31
-1.2
N.D.
-0.0
-0.4
+0.1
phage
TP7
-1.2
N.D.
-0.1
-0.0
-0.0
phage
Bas22
-0.7
N.D.
+0.1
-0.6
-0.2
phage
Bas04
-0.3
N.D.
-0.2
-0.7
-0.0
phage
JK38
-1.0
N.D.
-0.1
+0.0
-0.1
phage
JK38
-1.0
N.D.
-0.1
+0.0
-0.0
phage
Bas38
-1.5
N.D.
+0.0
+0.3
+0.2
phage
RB68
+0.2
N.D.
+0.1
-1.0
-0.3
phage
JK16
-0.6
N.D.
-0.2
-0.1
-0.1
phage
Bas27
-0.7
N.D.
-0.1
-0.1
-0.1
phage
Bas22
-0.9
N.D.
+0.1
-0.0
-0.1
phage
JK16
-0.4
N.D.
-0.1
-0.4
+0.0
phage
Bas21
-1.1
N.D.
-0.0
+0.3
-0.0
phage
CEV1
-0.3
N.D.
-0.1
-0.3
-0.1
phage
CEV1
-0.9
N.D.
-0.1
+0.3
-0.1
phage
Bas45
-1.1
N.D.
+0.1
+0.2
+0.1
phage
Bas05
-0.6
N.D.
-0.1
+0.1
-0.1
phage
Bas31
-1.1
N.D.
+0.0
+0.4
+0.1
phage
Bas27
-0.7
N.D.
-0.1
+0.2
-0.1
carbon source
L-Rhamnose
-0.5
N.D.
+0.2
+0.1
-0.2
carbon source
D-Glucose
-0.2
N.D.
+0.2
-0.7
+0.3
carbon source
L-Rhamnose
-0.5
N.D.
+0.1
+0.3
+0.1
carbon source
L-Arabinose
+0.3
N.D.
-0.2
-0.2
+0.3
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