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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS22510 and ECOLIN_RS22515 are separated by 285 nucleotides
ECOLIN_RS22515 and ECOLIN_RS22525 are separated by 259 nucleotides
ECOLIN_RS22525 and ECOLIN_RS22530 are separated by 148 nucleotides
ECOLIN_RS22530 and ECOLIN_RS22535 are separated by 105 nucleotides
ECOLIN_RS22510: ECOLIN_RS22510 - L-rhamnose/proton symporter RhaT, at 4,522,287 to 4,523,321
_RS22510
ECOLIN_RS22515: ECOLIN_RS22515 - superoxide dismutase [Mn], at 4,523,607 to 4,524,227
_RS22515
ECOLIN_RS22525: ECOLIN_RS22525 - 2-keto-3-deoxygluconate transporter, at 4,524,487 to 4,525,470
_RS22525
ECOLIN_RS22530: ECOLIN_RS22530 - 6-hydroxyaminopurine reductase, at 4,525,619 to 4,526,293
_RS22530
ECOLIN_RS22535: ECOLIN_RS22535 - envelope stress sensor histidine kinase CpxA, at 4,526,399 to 4,527,772
_RS22535
Group
Condition
ECOLIN
_RS22510
ECOLIN
_RS22515
ECOLIN
_RS22525
ECOLIN
_RS22530
ECOLIN
_RS22535
phage
TP7
-0.0
-0.3
-0.1
+0.2
-3.2
phage
Bas37
+0.1
-0.4
+0.0
+0.1
-3.0
phage
TP7
+0.0
-0.2
+0.0
+0.0
-2.5
phage
JK38
+0.1
-0.4
-0.1
+0.2
-2.4
phage
JK38
+0.0
-0.1
+0.0
+0.1
-2.6
phage
EV219
+0.0
-0.4
-0.1
-0.2
-1.7
phage
Bas37
+0.0
-0.2
+0.0
-0.1
-1.7
phage
Bas31
+0.1
-0.3
-0.1
+0.0
-1.6
phage
Bas31
+0.0
-0.3
+0.1
+0.0
-1.7
phage
Bas45
-0.0
-0.4
+0.0
-0.2
-1.1
phage
Bas10
-0.0
-0.1
-0.1
-0.0
-1.5
phage
P1vir
-0.0
+0.2
+0.0
+0.1
-1.7
phage
Bas04
-0.1
-0.2
+0.0
-0.1
-0.9
phage
Bas10
-0.0
-0.0
+0.1
-0.1
-1.1
phage
Bas05
+0.0
+0.1
-0.1
+0.0
-1.1
phage
Bas22
+0.2
-0.2
-0.4
-0.1
-0.5
phage
Bas63
-0.1
-0.1
-0.0
-0.1
-0.7
phage
EV219
-0.1
-0.2
+0.1
-0.0
-0.9
phage
JK16
+0.1
-0.1
+0.0
-0.1
-0.8
phage
CEV1
+0.0
-0.3
+0.1
-0.1
-0.7
carbon source
D-Glucose
-0.0
-0.3
-0.0
+0.1
-0.5
phage
Bas05
+0.1
-0.2
+0.0
+0.2
-0.8
phage
Bas27
+0.1
-0.2
+0.1
+0.1
-0.6
phage
K20
-0.1
+0.1
-0.1
-0.2
+0.5
phage
K20
-0.0
-0.1
-0.2
+0.2
+0.6
carbon source
L-Arabinose
-0.1
-0.6
+0.2
+0.0
+1.0
carbon source
L-Arabinose
-0.1
-0.5
+0.1
-0.2
+1.3
phage
Bas38
+0.2
-0.1
+0.1
+0.1
+0.7
carbon source
L-Rhamnose
+4.0
-0.1
+0.4
+0.2
+0.2
carbon source
L-Rhamnose
+4.8
+0.0
-0.0
+0.2
+2.8
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