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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS22505 and ECOLIN_RS22510 overlap by 4 nucleotides
ECOLIN_RS22510 and ECOLIN_RS22515 are separated by 285 nucleotides
ECOLIN_RS22515 and ECOLIN_RS22525 are separated by 259 nucleotides
ECOLIN_RS22525 and ECOLIN_RS22530 are separated by 148 nucleotides
ECOLIN_RS22505: ECOLIN_RS22505 - HTH-type transcriptional activator RhaR, at 4,521,442 to 4,522,290
_RS22505
ECOLIN_RS22510: ECOLIN_RS22510 - L-rhamnose/proton symporter RhaT, at 4,522,287 to 4,523,321
_RS22510
ECOLIN_RS22515: ECOLIN_RS22515 - superoxide dismutase [Mn], at 4,523,607 to 4,524,227
_RS22515
ECOLIN_RS22525: ECOLIN_RS22525 - 2-keto-3-deoxygluconate transporter, at 4,524,487 to 4,525,470
_RS22525
ECOLIN_RS22530: ECOLIN_RS22530 - 6-hydroxyaminopurine reductase, at 4,525,619 to 4,526,293
_RS22530
Group
Condition
ECOLIN
_RS22505
ECOLIN
_RS22510
ECOLIN
_RS22515
ECOLIN
_RS22525
ECOLIN
_RS22530
phage
Bas22
-0.2
+0.2
-0.2
-0.4
-0.1
phage
Bas63
-0.2
-0.1
-0.1
-0.1
-0.1
phage
Bas45
+0.0
+0.0
-0.4
+0.0
-0.1
phage
Bas68
-0.2
-0.1
+0.1
-0.2
-0.1
phage
Bas63
+0.0
-0.0
-0.2
-0.0
-0.2
phage
Bas48
-0.1
+0.1
-0.1
-0.2
-0.1
phage
K20
-0.1
-0.1
+0.1
-0.1
-0.2
no phage control
Control_Nissle
-0.0
-0.0
-0.1
-0.1
-0.0
phage
Bas52
+0.1
+0.0
-0.1
-0.0
-0.3
phage
RB51
+0.0
+0.1
+0.0
-0.4
+0.0
phage
RB51
+0.0
+0.0
-0.2
-0.0
-0.1
phage
Bas68
+0.0
-0.0
+0.0
-0.2
-0.0
phage
Bas52
-0.1
+0.1
-0.2
+0.0
-0.1
phage
Bas44
-0.0
+0.0
-0.1
-0.0
-0.1
phage
Bas22
+0.1
-0.1
-0.1
-0.1
+0.0
phage
Bas44
-0.0
+0.1
+0.1
-0.1
-0.1
phage
P1vir
+0.1
-0.0
+0.1
-0.3
+0.0
phage
Bas51
-0.1
-0.0
+0.1
-0.0
+0.0
phage
K25
-0.1
+0.0
+0.0
+0.1
-0.0
phage
K25
-0.0
+0.1
+0.0
-0.1
-0.1
phage
RB68
-0.1
+0.0
+0.1
-0.1
+0.1
phage
Bas48
+0.2
-0.0
-0.1
-0.1
-0.0
no phage control
Control_Nissle
-0.0
+0.1
+0.0
-0.0
-0.0
phage
K20
+0.1
+0.0
-0.1
-0.2
+0.2
phage
RB68
+0.1
-0.1
+0.1
-0.1
+0.2
phage
P1vir
+0.1
-0.0
+0.2
+0.0
+0.1
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