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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS22080 and ECOLIN_RS22085 are separated by 12 nucleotides
ECOLIN_RS22085 and ECOLIN_RS22090 are separated by 16 nucleotides
ECOLIN_RS22090 and ECOLIN_RS22095 are separated by 24 nucleotides
ECOLIN_RS22095 and ECOLIN_RS22100 overlap by 11 nucleotides
ECOLIN_RS22080: ECOLIN_RS22080 - tripartite tricarboxylate transporter permease, at 4,435,495 to 4,436,985
_RS22080
ECOLIN_RS22085: ECOLIN_RS22085 - tripartite tricarboxylate transporter TctB family protein, at 4,436,998 to 4,437,504
_RS22085
ECOLIN_RS22090: ECOLIN_RS22090 - tripartite tricarboxylate transporter substrate binding protein, at 4,437,521 to 4,438,495
_RS22090
ECOLIN_RS22095: ECOLIN_RS22095 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,438,520 to 4,439,149
_RS22095
ECOLIN_RS22100: ECOLIN_RS22100 - 2-dehydro-3-deoxygalactonokinase, at 4,439,139 to 4,440,143
_RS22100
Group
Condition
ECOLIN
_RS22080
ECOLIN
_RS22085
ECOLIN
_RS22090
ECOLIN
_RS22095
ECOLIN
_RS22100
no phage control
Control_Nissle
-0.0
-0.2
-0.1
+0.0
-0.1
carbon source
L-Arabinose
+0.0
-0.2
-0.1
-0.2
-0.0
carbon source
D-Glucose
-0.0
-0.1
-0.1
+0.0
-0.2
phage
RB68
-0.0
-0.2
+0.0
-0.1
-0.1
phage
Bas68
-0.1
-0.0
-0.2
-0.2
+0.2
carbon source
L-Rhamnose
+0.2
-0.0
-0.3
-0.1
+0.0
carbon source
D-Glucose
-0.1
+0.1
+0.0
-0.2
+0.1
phage
Bas22
-0.1
+0.1
-0.0
-0.1
+0.0
phage
EV219
-0.2
+0.0
+0.1
-0.0
+0.1
no phage control
Control_Nissle
-0.2
+0.1
-0.0
+0.0
+0.1
phage
Bas52
-0.0
-0.1
+0.0
-0.0
+0.2
phage
Bas04
-0.0
+0.1
-0.1
+0.2
-0.1
phage
Bas48
-0.1
+0.1
+0.0
-0.1
+0.2
phage
Bas63
-0.0
+0.1
+0.0
-0.1
+0.2
phage
Bas37
-0.1
+0.1
+0.1
+0.1
-0.0
phage
K20
+0.0
+0.1
+0.0
-0.1
+0.2
phage
Bas68
-0.1
+0.1
+0.0
-0.0
+0.2
phage
Bas21
+0.0
+0.2
+0.1
+0.1
-0.0
phage
JK38
-0.0
+0.2
+0.1
+0.1
+0.1
phage
Phi92
+0.2
-0.0
+0.1
+0.1
+0.1
phage
Bas37
+0.0
+0.0
+0.1
+0.2
+0.0
phage
Bas05
-0.0
+0.1
+0.1
+0.1
+0.2
phage
Bas38
+0.0
+0.1
+0.1
+0.1
+0.1
phage
RB51
-0.1
+0.2
+0.0
+0.1
+0.2
phage
Bas44
+0.0
+0.3
+0.1
-0.1
+0.2
phage
Bas44
+0.1
+0.1
+0.0
+0.1
+0.2
phage
Bas38
+0.0
+0.2
+0.1
+0.2
+0.1
phage
CEV1
-0.0
+0.1
+0.1
+0.2
+0.2
phage
Bas45
+0.1
+0.3
+0.2
-0.0
+0.2
phage
TP7
-0.1
+0.4
+0.1
+0.2
+0.1
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ECOLIN_RS22090
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