Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS22080 and ECOLIN_RS22085 are separated by 12 nucleotidesECOLIN_RS22085 and ECOLIN_RS22090 are separated by 16 nucleotidesECOLIN_RS22090 and ECOLIN_RS22095 are separated by 24 nucleotidesECOLIN_RS22095 and ECOLIN_RS22100 overlap by 11 nucleotides ECOLIN_RS22080: ECOLIN_RS22080 - tripartite tricarboxylate transporter permease, at 4,435,495 to 4,436,985 _RS22080 ECOLIN_RS22085: ECOLIN_RS22085 - tripartite tricarboxylate transporter TctB family protein, at 4,436,998 to 4,437,504 _RS22085 ECOLIN_RS22090: ECOLIN_RS22090 - tripartite tricarboxylate transporter substrate binding protein, at 4,437,521 to 4,438,495 _RS22090 ECOLIN_RS22095: ECOLIN_RS22095 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,438,520 to 4,439,149 _RS22095 ECOLIN_RS22100: ECOLIN_RS22100 - 2-dehydro-3-deoxygalactonokinase, at 4,439,139 to 4,440,143 _RS22100
Group Condition ECOLIN_RS22080 ECOLIN_RS22085 ECOLIN_RS22090 ECOLIN_RS22095 ECOLIN_RS22100
no phage control Control_Nissle -0.0 -0.2 -0.1 +0.0 -0.1
carbon source L-Arabinose +0.0 -0.2 -0.1 -0.2 -0.0
carbon source D-Glucose -0.0 -0.1 -0.1 +0.0 -0.2
phage RB68 -0.0 -0.2 +0.0 -0.1 -0.1
phage Bas68 -0.1 -0.0 -0.2 -0.2 +0.2
carbon source L-Rhamnose +0.2 -0.0 -0.3 -0.1 +0.0
carbon source D-Glucose -0.1 +0.1 +0.0 -0.2 +0.1
phage Bas22 -0.1 +0.1 -0.0 -0.1 +0.0
phage EV219 -0.2 +0.0 +0.1 -0.0 +0.1
no phage control Control_Nissle -0.2 +0.1 -0.0 +0.0 +0.1
phage Bas52 -0.0 -0.1 +0.0 -0.0 +0.2
phage Bas04 -0.0 +0.1 -0.1 +0.2 -0.1
phage Bas48 -0.1 +0.1 +0.0 -0.1 +0.2
phage Bas63 -0.0 +0.1 +0.0 -0.1 +0.2
phage Bas37 -0.1 +0.1 +0.1 +0.1 -0.0
phage K20 +0.0 +0.1 +0.0 -0.1 +0.2
phage Bas68 -0.1 +0.1 +0.0 -0.0 +0.2
phage Bas21 +0.0 +0.2 +0.1 +0.1 -0.0
phage JK38 -0.0 +0.2 +0.1 +0.1 +0.1
phage Phi92 +0.2 -0.0 +0.1 +0.1 +0.1
phage Bas37 +0.0 +0.0 +0.1 +0.2 +0.0
phage Bas05 -0.0 +0.1 +0.1 +0.1 +0.2
phage Bas38 +0.0 +0.1 +0.1 +0.1 +0.1
phage RB51 -0.1 +0.2 +0.0 +0.1 +0.2
phage Bas44 +0.0 +0.3 +0.1 -0.1 +0.2
phage Bas44 +0.1 +0.1 +0.0 +0.1 +0.2
phage Bas38 +0.0 +0.2 +0.1 +0.2 +0.1
phage CEV1 -0.0 +0.1 +0.1 +0.2 +0.2
phage Bas45 +0.1 +0.3 +0.2 -0.0 +0.2
phage TP7 -0.1 +0.4 +0.1 +0.2 +0.1
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