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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS21660 and ECOLIN_RS21665 are separated by 64 nucleotides
ECOLIN_RS21665 and ECOLIN_RS21670 are separated by 2 nucleotides
ECOLIN_RS21670 and ECOLIN_RS21675 overlap by 4 nucleotides
ECOLIN_RS21675 and ECOLIN_RS21680 are separated by 149 nucleotides
ECOLIN_RS21660: ECOLIN_RS21660 - branched-chain-amino-acid transaminase, at 4,350,154 to 4,351,083
_RS21660
ECOLIN_RS21665: ECOLIN_RS21665 - dihydroxy-acid dehydratase, at 4,351,148 to 4,352,998
_RS21665
ECOLIN_RS21670: ECOLIN_RS21670 - threonine ammonia-lyase, biosynthetic, at 4,353,001 to 4,354,545
_RS21670
ECOLIN_RS21675: ECOLIN_RS21675 - HTH-type transcriptional activator IlvY, at 4,354,542 to 4,355,432
_RS21675
ECOLIN_RS21680: ECOLIN_RS21680 - ketol-acid reductoisomerase, at 4,355,582 to 4,357,057
_RS21680
Group
Condition
ECOLIN
_RS21660
ECOLIN
_RS21665
ECOLIN
_RS21670
ECOLIN
_RS21675
ECOLIN
_RS21680
carbon source
Sodium-DL-Lactate
-3.5
-3.6
-3.0
-2.7
-4.2
carbon source
Sodium-DL-Lactate
-3.1
-3.3
-2.5
-2.5
-3.3
carbon source
D-Glucose
+1.3
-4.6
+0.8
-3.8
-4.7
carbon source
L-Arabinose
-1.4
-3.1
+0.3
-3.2
-3.3
carbon source
L-Arabinose
-1.0
-2.4
+0.2
-3.1
-2.9
carbon source
D-Glucose
+0.6
-3.7
+1.3
-3.3
-3.6
carbon source
L-Rhamnose
-1.6
-1.7
-0.9
-0.5
-1.3
carbon source
L-Rhamnose
-0.6
-0.8
-0.4
-0.1
-0.8
phage
Phi92
+0.0
-0.0
-0.1
-0.3
-0.1
phage
CEV1
+0.0
-0.1
-0.1
-0.2
-0.0
phage
Bas31
-0.1
+0.0
-0.1
+0.0
-0.2
phage
Phi92
-0.1
+0.0
-0.1
+0.0
-0.2
phage
TP7
+0.2
-0.0
-0.0
-0.2
-0.2
phage
EV219
+0.1
-0.1
-0.0
-0.1
-0.1
phage
Bas68
-0.2
-0.0
+0.0
-0.1
+0.1
phage
Bas21
+0.1
-0.1
-0.1
+0.0
-0.1
phage
Bas63
-0.1
+0.1
-0.0
-0.1
-0.0
phage
Bas48
-0.0
+0.1
-0.1
-0.0
-0.2
phage
Bas63
-0.1
+0.1
-0.1
-0.1
+0.0
phage
Bas45
+0.1
+0.1
-0.2
-0.1
+0.1
phage
RB51
+0.0
+0.1
+0.1
-0.1
-0.0
phage
Bas10
+0.2
-0.1
+0.1
-0.1
+0.0
phage
CEV1
+0.1
-0.1
+0.1
+0.1
-0.1
phage
RB68
+0.0
+0.2
-0.2
+0.1
+0.2
phage
Bas22
+0.1
+0.1
-0.0
+0.1
+0.1
phage
K25
+0.1
+0.2
-0.2
+0.1
+0.2
no phage control
Control_Nissle
+0.1
+0.1
+0.1
+0.0
+0.2
phage
RB51
+0.2
+0.0
+0.0
+0.1
+0.2
phage
Bas10
+0.2
-0.0
+0.2
+0.1
+0.0
phage
P1vir
+0.3
+0.1
+0.1
+0.1
+0.0
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