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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS21535 and ECOLIN_RS21540 overlap by 7 nucleotides
ECOLIN_RS21540 and ECOLIN_RS21545 are separated by 222 nucleotides
ECOLIN_RS21545 and ECOLIN_RS21550 are separated by 166 nucleotides
ECOLIN_RS21550 and ECOLIN_RS21555 are separated by 7 nucleotides
ECOLIN_RS21535: ECOLIN_RS21535 - ATPase RavA stimulator ViaA, at 4,324,907 to 4,326,358
_RS21535
ECOLIN_RS21540: ECOLIN_RS21540 - ATPase RavA, at 4,326,352 to 4,327,848
_RS21540
ECOLIN_RS21545: ECOLIN_RS21545 - low affinity potassium transporter Kup, at 4,328,071 to 4,329,939
_RS21545
ECOLIN_RS21550: ECOLIN_RS21550 - D-ribose pyranase, at 4,330,106 to 4,330,525
_RS21550
ECOLIN_RS21555: ECOLIN_RS21555 - ribose ABC transporter ATP-binding protein RbsA, at 4,330,533 to 4,332,038
_RS21555
Group
Condition
ECOLIN
_RS21535
ECOLIN
_RS21540
ECOLIN
_RS21545
ECOLIN
_RS21550
ECOLIN
_RS21555
phage
TP7
+0.0
+0.0
-0.8
-1.1
-0.8
phage
TP7
-0.1
+0.0
-0.4
-0.6
-0.5
phage
Bas37
-0.0
+0.0
-0.4
-0.6
-0.5
phage
Bas37
+0.1
+0.0
-0.4
-0.5
-0.6
phage
Bas21
-0.0
-0.0
-0.3
-0.5
-0.4
phage
JK38
-0.1
+0.0
-0.4
-0.4
-0.4
phage
Bas38
-0.1
+0.0
-0.4
-0.4
-0.4
phage
JK38
-0.1
+0.0
-0.3
-0.4
-0.5
phage
Bas21
-0.1
+0.0
-0.3
-0.4
-0.3
phage
Bas45
-0.2
-0.0
-0.4
-0.2
-0.3
phage
Bas38
-0.1
-0.0
-0.2
-0.2
-0.4
phage
EV219
-0.0
+0.0
-0.3
-0.4
-0.3
phage
Bas22
+0.1
-0.0
-0.3
-0.3
-0.3
phage
Bas31
-0.0
+0.1
-0.3
-0.3
-0.3
phage
EV219
-0.1
+0.0
-0.5
-0.1
-0.3
phage
Bas22
-0.0
-0.0
-0.2
-0.3
-0.2
phage
Bas31
-0.0
+0.1
-0.3
-0.4
-0.2
phage
Bas27
-0.1
+0.0
-0.2
-0.2
-0.2
phage
P1vir
-0.2
+0.0
+0.0
-0.1
-0.2
phage
Bas27
-0.2
+0.1
-0.0
-0.2
-0.1
carbon source
D-Glucose
-0.3
-0.1
+0.1
+0.1
-0.0
carbon source
L-Rhamnose
+0.1
+0.1
-0.0
-0.3
-0.1
phage
Bas68
+0.1
-0.1
-0.1
+0.2
+0.0
carbon source
L-Arabinose
-0.0
+0.1
+0.1
+0.2
-0.1
phage
Bas63
-0.0
+0.0
-0.1
+0.2
+0.2
carbon source
L-Rhamnose
+0.4
+0.1
+0.0
+0.0
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.1
+0.3
-0.0
carbon source
Casamino-acids
+0.2
+0.2
+0.0
+0.4
+0.1
phage
Bas10
+0.4
+0.3
+0.3
+0.4
+0.3
phage
Bas10
+0.6
+0.6
+0.5
+0.6
+0.6
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