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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS33285 and ECOLIN_RS21305 are separated by 20 nucleotides
ECOLIN_RS21305 and ECOLIN_RS21310 are separated by 28 nucleotides
ECOLIN_RS21310 and ECOLIN_RS21315 overlap by 1 nucleotides
ECOLIN_RS21315 and ECOLIN_RS21320 are separated by 4 nucleotides
ECOLIN_RS33285: ECOLIN_RS33285 - hypothetical protein, at 4,275,041 to 4,275,142
_RS33285
ECOLIN_RS21305: ECOLIN_RS21305 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 4,275,163 to 4,277,577
_RS21305
ECOLIN_RS21310: ECOLIN_RS21310 - DNA replication/repair protein RecF, at 4,277,606 to 4,278,679
_RS21310
ECOLIN_RS21315: ECOLIN_RS21315 - DNA polymerase III subunit beta, at 4,278,679 to 4,279,779
_RS21315
ECOLIN_RS21320: ECOLIN_RS21320 - chromosomal replication initiator protein DnaA, at 4,279,784 to 4,281,188
_RS21320
Group
Condition
ECOLIN
_RS33285
ECOLIN
_RS21305
ECOLIN
_RS21310
ECOLIN
_RS21315
ECOLIN
_RS21320
phage
Bas45
N.D.
N.D.
-0.7
N.D.
N.D.
phage
TP7
N.D.
N.D.
-0.6
N.D.
N.D.
phage
JK38
N.D.
N.D.
-0.4
N.D.
N.D.
phage
Bas44
N.D.
N.D.
-0.4
N.D.
N.D.
phage
Bas44
N.D.
N.D.
-0.3
N.D.
N.D.
phage
TP7
N.D.
N.D.
-0.3
N.D.
N.D.
phage
Bas37
N.D.
N.D.
-0.3
N.D.
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
-0.3
N.D.
N.D.
phage
EV219
N.D.
N.D.
-0.3
N.D.
N.D.
carbon source
Sodium-DL-Lactate
N.D.
N.D.
-0.3
N.D.
N.D.
phage
P1vir
N.D.
N.D.
-0.3
N.D.
N.D.
phage
RB51
N.D.
N.D.
-0.2
N.D.
N.D.
phage
Bas37
N.D.
N.D.
-0.2
N.D.
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
-0.2
N.D.
N.D.
carbon source
Casamino-acids
N.D.
N.D.
-0.2
N.D.
N.D.
phage
RB51
N.D.
N.D.
-0.2
N.D.
N.D.
carbon source
D-Glucose
N.D.
N.D.
-0.2
N.D.
N.D.
phage
CEV1
N.D.
N.D.
-0.2
N.D.
N.D.
phage
CEV1
N.D.
N.D.
-0.2
N.D.
N.D.
carbon source
L-Arabinose
N.D.
N.D.
-0.2
N.D.
N.D.
phage
K20
N.D.
N.D.
-0.2
N.D.
N.D.
phage
Bas10
N.D.
N.D.
-0.2
N.D.
N.D.
phage
Bas63
N.D.
N.D.
-0.2
N.D.
N.D.
carbon source
Casamino-acids
N.D.
N.D.
-0.2
N.D.
N.D.
phage
Phi92
N.D.
N.D.
-0.2
N.D.
N.D.
phage
JK16
N.D.
N.D.
-0.1
N.D.
N.D.
carbon source
L-Arabinose
N.D.
N.D.
-0.1
N.D.
N.D.
phage
RB68
N.D.
N.D.
+0.1
N.D.
N.D.
phage
Bas68
N.D.
N.D.
+0.3
N.D.
N.D.
phage
Bas52
N.D.
N.D.
+0.5
N.D.
N.D.
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