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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS21250 and ECOLIN_RS21255 are separated by 100 nucleotides
ECOLIN_RS21255 and ECOLIN_RS21260 overlap by 40 nucleotides
ECOLIN_RS21260 and ECOLIN_RS21265 are separated by 74 nucleotides
ECOLIN_RS21265 and ECOLIN_RS21270 overlap by 4 nucleotides
ECOLIN_RS21250: ECOLIN_RS21250 - DUF3748 domain-containing protein, at 4,265,519 to 4,266,733
_RS21250
ECOLIN_RS21255: ECOLIN_RS21255 - colicin M resistance lipid reductase CbrA, at 4,266,834 to 4,267,934
_RS21255
ECOLIN_RS21260: ECOLIN_RS21260 - MFS transporter, at 4,267,895 to 4,269,232
_RS21260
ECOLIN_RS21265: ECOLIN_RS21265 - galactonate dehydratase, at 4,269,307 to 4,270,455
_RS21265
ECOLIN_RS21270: ECOLIN_RS21270 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,270,452 to 4,271,070
_RS21270
Group
Condition
ECOLIN
_RS21250
ECOLIN
_RS21255
ECOLIN
_RS21260
ECOLIN
_RS21265
ECOLIN
_RS21270
phage
CEV1
-0.1
-0.1
-0.1
-0.2
-0.1
phage
RB51
-0.0
-0.1
-0.1
-0.1
-0.2
phage
CEV1
-0.1
-0.1
-0.3
-0.1
-0.0
phage
TP7
-0.1
-0.1
-0.1
-0.1
-0.1
phage
Bas38
-0.1
-0.1
-0.1
-0.1
-0.1
phage
RB68
-0.0
-0.1
-0.1
-0.0
-0.2
phage
Bas38
-0.1
-0.1
-0.1
-0.0
-0.1
phage
Bas22
-0.0
-0.0
+0.0
+0.0
-0.4
carbon source
L-Rhamnose
-0.1
+0.0
-0.1
-0.0
-0.2
phage
Bas63
+0.1
-0.1
+0.0
-0.1
-0.3
phage
Bas63
-0.0
+0.0
+0.0
-0.2
-0.2
no phage control
Control_Nissle
-0.0
-0.2
-0.1
+0.0
+0.0
phage
JK38
-0.1
+0.1
-0.1
-0.2
-0.0
phage
Bas51
-0.0
-0.0
+0.0
-0.0
-0.3
phage
JK16
+0.0
-0.1
-0.1
+0.1
-0.2
phage
Bas52
+0.0
-0.0
-0.2
-0.0
-0.1
phage
Bas45
-0.2
-0.1
+0.1
-0.2
+0.1
phage
Bas31
-0.2
+0.1
-0.0
-0.0
-0.1
phage
Bas68
+0.0
+0.0
+0.1
-0.1
-0.2
phage
K25
+0.1
-0.1
+0.2
-0.0
-0.3
phage
K20
+0.0
-0.2
+0.1
-0.1
+0.1
phage
EV219
+0.1
+0.0
+0.1
-0.1
-0.1
phage
Bas22
+0.1
-0.1
+0.2
-0.2
+0.0
carbon source
Sodium-DL-Lactate
+0.0
-0.0
+0.2
+0.0
-0.1
carbon source
L-Rhamnose
+0.1
-0.1
+0.2
-0.0
-0.1
phage
P1vir
+0.1
-0.2
+0.0
+0.1
+0.1
no phage control
Control_Nissle
+0.0
-0.0
+0.1
-0.2
+0.1
phage
Bas04
+0.0
-0.1
+0.1
+0.1
-0.0
phage
Bas27
+0.0
+0.2
+0.1
+0.0
-0.0
carbon source
D-Glucose
+0.0
+0.2
+0.0
-0.0
+0.2
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