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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS21195 and ECOLIN_RS21200 overlap by 4 nucleotides
ECOLIN_RS21200 and ECOLIN_RS21205 overlap by 11 nucleotides
ECOLIN_RS21205 and ECOLIN_RS21210 are separated by 59 nucleotides
ECOLIN_RS21210 and ECOLIN_RS21215 overlap by 4 nucleotides
ECOLIN_RS21195: ECOLIN_RS21195 - radical SAM protein, at 4,256,487 to 4,256,984
_RS21195
ECOLIN_RS21200: ECOLIN_RS21200 - DUF202 domain-containing protein, at 4,256,981 to 4,257,343
_RS21200
ECOLIN_RS21205: ECOLIN_RS21205 - YidH family protein, at 4,257,333 to 4,257,680
_RS21205
ECOLIN_RS21210: ECOLIN_RS21210 - sulfatase-like hydrolase/transferase, at 4,257,740 to 4,259,233
_RS21210
ECOLIN_RS21215: ECOLIN_RS21215 - solute:sodium symporter family transporter, at 4,259,230 to 4,260,945
_RS21215
Group
Condition
ECOLIN
_RS21195
ECOLIN
_RS21200
ECOLIN
_RS21205
ECOLIN
_RS21210
ECOLIN
_RS21215
phage
Bas38
-1.3
-0.1
-0.2
+0.0
-0.1
phage
Bas21
-1.5
-0.3
+0.1
+0.1
+0.0
phage
TP7
-0.5
-0.2
-0.3
-0.2
-0.2
phage
Bas21
-1.3
-0.2
+0.0
+0.1
-0.1
phage
JK16
-1.4
+0.1
+0.0
+0.0
-0.1
phage
Bas10
-1.1
-0.0
+0.0
+0.0
-0.1
phage
Bas04
-1.3
-0.0
+0.0
+0.0
+0.0
phage
TP7
-0.8
-0.2
+0.0
-0.0
-0.2
phage
Bas10
-1.1
+0.0
-0.0
+0.0
-0.0
phage
Bas37
-0.7
-0.3
-0.0
-0.0
-0.1
phage
Bas37
-0.6
-0.3
-0.2
-0.0
-0.0
phage
Bas48
-1.0
-0.0
+0.0
+0.0
+0.0
phage
Bas45
-0.9
+0.1
-0.1
-0.1
+0.0
phage
P1vir
-0.6
-0.2
-0.3
+0.1
+0.0
phage
Bas31
-0.7
-0.0
-0.1
+0.0
-0.1
phage
JK16
-0.8
-0.1
-0.1
+0.1
-0.0
phage
Bas22
-0.8
-0.2
-0.1
+0.1
+0.0
phage
EV219
-0.8
-0.1
+0.0
+0.0
-0.1
phage
JK38
-0.6
-0.3
+0.1
-0.0
+0.0
phage
JK38
-0.5
-0.3
+0.1
+0.1
-0.2
phage
Bas05
-0.7
+0.1
-0.2
+0.0
-0.0
phage
CEV1
-0.7
+0.1
+0.3
-0.1
-0.2
phage
Bas48
-0.7
-0.0
-0.1
-0.0
+0.1
phage
RB51
-0.6
+0.1
+0.3
-0.2
-0.1
carbon source
L-Rhamnose
+0.4
-0.4
+0.2
-0.1
+0.1
phage
K20
+0.5
-0.0
+0.3
-0.0
+0.1
phage
RB68
+0.6
+0.1
+0.2
+0.1
-0.1
carbon source
L-Arabinose
+0.8
+0.1
+0.2
-0.1
-0.0
phage
Bas68
+0.9
+0.0
+0.1
-0.1
+0.0
carbon source
L-Arabinose
+1.2
+0.3
+0.2
-0.0
-0.1
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