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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20790 and ECOLIN_RS20795 are separated by 6 nucleotides
ECOLIN_RS20795 and ECOLIN_RS20800 are separated by 5 nucleotides
ECOLIN_RS20800 and ECOLIN_RS20805 are separated by 33 nucleotides
ECOLIN_RS20805 and ECOLIN_RS20810 are separated by 279 nucleotides
ECOLIN_RS20790: ECOLIN_RS20790 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 4,186,735 to 4,188,843
_RS20790
ECOLIN_RS20795: ECOLIN_RS20795 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 4,188,850 to 4,189,539
_RS20795
ECOLIN_RS20800: ECOLIN_RS20800 - ATP-dependent DNA helicase RecG, at 4,189,545 to 4,191,626
_RS20800
ECOLIN_RS20805: ECOLIN_RS20805 - sodium/glutamate symporter, at 4,191,660 to 4,192,865
_RS20805
ECOLIN_RS20810: ECOLIN_RS20810 - xanthine/proton symporter XanP, at 4,193,145 to 4,194,536
_RS20810
Group
Condition
ECOLIN
_RS20790
ECOLIN
_RS20795
ECOLIN
_RS20800
ECOLIN
_RS20805
ECOLIN
_RS20810
carbon source
Casamino-acids
-2.1
-0.9
-1.0
-0.2
+0.0
carbon source
Sodium-DL-Lactate
-2.0
-0.7
-1.3
-0.1
-0.1
phage
CEV1
-3.6
+0.1
-0.3
-0.0
-0.0
phage
K20
-3.2
-0.4
-0.3
+0.0
+0.1
phage
Bas44
-2.7
-0.5
-0.7
+0.2
-0.0
phage
Bas10
-2.5
-0.3
-0.7
-0.2
+0.0
carbon source
Sodium-DL-Lactate
-1.5
-1.0
-1.0
-0.0
+0.0
phage
K20
-3.0
-0.2
-0.2
-0.0
-0.0
phage
JK38
-1.5
-0.7
-0.9
-0.5
+0.1
carbon source
L-Rhamnose
-1.0
-0.9
-1.3
+0.0
-0.0
phage
Bas44
-2.0
-0.3
-0.9
+0.2
+0.1
no phage control
Control_Nissle
-2.9
+0.0
-0.2
-0.0
+0.1
phage
Phi92
-2.7
+0.1
-0.3
-0.3
+0.1
no phage control
Control_Nissle
-3.0
-0.1
+0.0
-0.1
+0.2
phage
RB51
-2.1
-0.3
-0.6
+0.0
-0.0
phage
Bas05
-2.3
-0.2
-0.4
-0.1
+0.1
phage
Bas63
-3.0
+0.5
+0.0
-0.1
-0.0
phage
Bas27
-2.9
+0.3
+0.1
-0.1
+0.1
phage
RB51
-1.2
-0.9
-0.4
+0.1
+0.1
carbon source
Casamino-acids
-1.3
-0.2
-0.9
+0.1
-0.1
phage
Bas04
-1.8
-0.3
-0.2
-0.1
+0.2
phage
Bas52
-1.7
-0.6
-0.2
+0.1
+0.1
carbon source
L-Rhamnose
+0.6
-1.4
-0.7
+0.1
+0.0
phage
Bas48
-2.2
+0.4
+0.2
+0.0
+0.1
phage
TP7
+0.8
-0.3
-1.4
-0.5
+0.1
phage
Bas68
-2.3
+0.7
+0.6
-0.1
+0.0
phage
P1vir
+1.1
-0.5
-0.9
+0.0
+0.1
phage
Bas52
-1.6
+0.7
+0.7
+0.0
+0.1
phage
Bas45
+2.7
-0.7
-1.1
-0.2
+0.1
carbon source
D-Glucose
+2.0
-0.3
+0.5
-0.2
-0.2
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