Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS20775 and ECOLIN_RS20780 are separated by 257 nucleotidesECOLIN_RS20780 and ECOLIN_RS20785 are separated by 54 nucleotidesECOLIN_RS20785 and ECOLIN_RS20790 are separated by 18 nucleotidesECOLIN_RS20790 and ECOLIN_RS20795 are separated by 6 nucleotides ECOLIN_RS20775: ECOLIN_RS20775 - NAD-dependent DNA ligase LigB, at 4,183,823 to 4,185,505 _RS20775 ECOLIN_RS20780: ECOLIN_RS20780 - guanylate kinase, at 4,185,763 to 4,186,386 _RS20780 ECOLIN_RS20785: ECOLIN_RS20785 - DNA-directed RNA polymerase subunit omega, at 4,186,441 to 4,186,716 _RS20785 ECOLIN_RS20790: ECOLIN_RS20790 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 4,186,735 to 4,188,843 _RS20790 ECOLIN_RS20795: ECOLIN_RS20795 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 4,188,850 to 4,189,539 _RS20795
Group Condition ECOLIN_RS20775 ECOLIN_RS20780 ECOLIN_RS20785 ECOLIN_RS20790 ECOLIN_RS20795
phage CEV1 +0.0 N.D. N.D. -3.6 +0.1
phage K20 +0.1 N.D. N.D. -3.2 -0.4
carbon source Casamino-acids -0.1 N.D. N.D. -2.1 -0.9
no phage control Control_Nissle -0.1 N.D. N.D. -3.0 -0.1
phage K20 +0.1 N.D. N.D. -3.0 -0.2
phage Bas44 +0.0 N.D. N.D. -2.7 -0.5
no phage control Control_Nissle -0.0 N.D. N.D. -2.9 +0.0
phage Bas10 -0.1 N.D. N.D. -2.5 -0.3
carbon source Sodium-DL-Lactate -0.1 N.D. N.D. -2.0 -0.7
carbon source Sodium-DL-Lactate -0.1 N.D. N.D. -1.5 -1.0
phage Bas27 -0.0 N.D. N.D. -2.9 +0.3
phage Phi92 -0.1 N.D. N.D. -2.7 +0.1
phage Bas63 -0.0 N.D. N.D. -3.0 +0.5
phage Bas05 -0.0 N.D. N.D. -2.3 -0.2
phage Bas44 -0.1 N.D. N.D. -2.0 -0.3
phage RB51 +0.1 N.D. N.D. -2.1 -0.3
phage Bas52 +0.0 N.D. N.D. -1.7 -0.6
phage Bas04 -0.0 N.D. N.D. -1.8 -0.3
phage JK38 -0.0 N.D. N.D. -1.5 -0.7
phage RB51 +0.1 N.D. N.D. -1.2 -0.9
carbon source L-Rhamnose +0.1 N.D. N.D. -1.0 -0.9
phage Bas48 +0.1 N.D. N.D. -2.2 +0.4
phage Bas05 +0.0 N.D. N.D. -1.7 +0.2
phage JK16 -0.1 N.D. N.D. -1.6 +0.2
phage Bas68 +0.1 N.D. N.D. -2.3 +0.7
carbon source L-Rhamnose -0.2 N.D. N.D. +0.6 -1.4
phage Bas52 -0.0 N.D. N.D. -1.6 +0.7
phage Bas68 +0.0 N.D. N.D. -1.4 +0.5
carbon source D-Glucose -0.2 N.D. N.D. +2.0 -0.3
phage Bas45 +0.1 N.D. N.D. +2.7 -0.7
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