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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20740 and ECOLIN_RS20745 are separated by 106 nucleotides
ECOLIN_RS20745 and ECOLIN_RS20750 are separated by 36 nucleotides
ECOLIN_RS20750 and ECOLIN_RS20755 are separated by 65 nucleotides
ECOLIN_RS20755 and ECOLIN_RS20760 are separated by 126 nucleotides
ECOLIN_RS20740: ECOLIN_RS20740 - dUTP diphosphatase, at 4,178,260 to 4,178,718
_RS20740
ECOLIN_RS20745: ECOLIN_RS20745 - nucleoid occlusion factor SlmA, at 4,178,825 to 4,179,421
_RS20745
ECOLIN_RS20750: ECOLIN_RS20750 - orotate phosphoribosyltransferase, at 4,179,458 to 4,180,099
_RS20750
ECOLIN_RS20755: ECOLIN_RS20755 - ribonuclease PH, at 4,180,165 to 4,180,881
_RS20755
ECOLIN_RS20760: ECOLIN_RS20760 - YicC/YloC family endoribonuclease, at 4,181,008 to 4,181,871
_RS20760
Group
Condition
ECOLIN
_RS20740
ECOLIN
_RS20745
ECOLIN
_RS20750
ECOLIN
_RS20755
ECOLIN
_RS20760
carbon source
Sodium-DL-Lactate
N.D.
-0.3
-7.9
-0.8
-0.2
carbon source
Casamino-acids
N.D.
-0.2
-6.0
-1.2
+0.0
carbon source
Casamino-acids
N.D.
-0.2
-4.9
-1.3
-0.1
carbon source
Sodium-DL-Lactate
N.D.
-0.0
-5.5
-0.8
-0.0
phage
Bas38
N.D.
-0.1
-1.2
-1.1
-1.0
carbon source
D-Glucose
N.D.
+0.1
-4.0
-0.3
+0.9
carbon source
D-Glucose
N.D.
-0.4
-3.5
-0.3
+0.9
phage
Bas38
N.D.
-0.2
-0.0
-1.3
-1.2
carbon source
L-Rhamnose
N.D.
+0.2
-1.4
-0.2
-1.0
phage
Bas21
N.D.
+0.3
-1.6
-0.4
-0.2
phage
RB51
N.D.
-0.2
-0.8
-0.6
-0.3
phage
Bas45
N.D.
-0.2
-1.5
+0.9
-1.2
phage
Bas48
N.D.
-0.1
-1.5
-0.5
+0.3
phage
CEV1
N.D.
-0.1
-0.6
-0.9
-0.1
phage
P1vir
N.D.
-0.5
-0.8
+0.5
-0.9
phage
Bas27
N.D.
+0.1
-1.3
-0.5
+0.3
phage
Bas52
N.D.
-0.5
-0.7
-0.3
+0.3
phage
Bas10
N.D.
+0.2
-1.2
-0.2
+0.2
phage
JK16
N.D.
-0.2
-0.9
+0.0
+0.6
phage
Bas22
N.D.
+0.1
-0.8
-0.3
+0.5
phage
Bas04
N.D.
-0.2
-1.0
-0.1
+1.1
phage
Bas05
N.D.
+0.3
-0.4
-0.5
+0.7
carbon source
L-Rhamnose
N.D.
+0.6
-0.6
+0.3
-0.2
phage
K20
N.D.
-0.3
+0.3
-0.4
+0.6
carbon source
L-Arabinose
N.D.
+0.0
-0.7
+0.4
+0.6
phage
Bas68
N.D.
+0.2
+0.5
-0.3
+0.5
no phage control
Control_Nissle
N.D.
-0.1
+0.2
-0.4
+1.3
phage
RB68
N.D.
+0.1
+0.7
+0.1
+0.7
phage
Bas37
N.D.
-0.1
+0.3
+0.0
+1.6
carbon source
L-Arabinose
N.D.
-0.0
+0.2
+0.6
+1.1
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