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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20670 and ECOLIN_RS20675 are separated by 25 nucleotides
ECOLIN_RS20675 and ECOLIN_RS20680 are separated by 9 nucleotides
ECOLIN_RS20680 and ECOLIN_RS20685 are separated by 16 nucleotides
ECOLIN_RS20685 and ECOLIN_RS20690 are separated by 15 nucleotides
ECOLIN_RS20670: ECOLIN_RS20670 - UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase, at 4,165,689 to 4,166,717
_RS20670
ECOLIN_RS20675: ECOLIN_RS20675 - lipopolysaccharide core heptose(II) kinase RfaY, at 4,166,743 to 4,167,435
_RS20675
ECOLIN_RS20680: ECOLIN_RS20680 - glycosyltransferase, at 4,167,445 to 4,168,440
_RS20680
ECOLIN_RS20685: ECOLIN_RS20685 - lipopolysaccharide 3-alpha-galactosyltransferase, at 4,168,457 to 4,169,473
_RS20685
ECOLIN_RS20690: ECOLIN_RS20690 - lipopolysaccharide core heptose(I) kinase RfaP, at 4,169,489 to 4,170,286
_RS20690
Group
Condition
ECOLIN
_RS20670
ECOLIN
_RS20675
ECOLIN
_RS20680
ECOLIN
_RS20685
ECOLIN
_RS20690
phage
JK38
-6.6
-5.4
-3.0
-1.0
-6.7
phage
Bas31
-1.7
-5.5
-1.3
-3.5
-6.8
phage
EV219
-1.9
-5.2
-1.3
-4.5
-5.4
phage
Bas45
-4.3
-4.1
-3.4
-3.8
-2.5
phage
Bas31
-2.6
-4.9
-1.1
-3.4
-5.9
phage
JK38
-3.8
-3.4
-2.7
-2.0
-5.7
phage
Bas37
-6.7
-5.4
-1.0
-0.4
-3.6
phage
Bas10
-1.3
-2.8
-1.1
-1.9
-4.2
phage
Bas37
-3.1
-2.1
-1.1
-0.5
-4.5
phage
Bas27
-1.2
-2.1
-0.4
-2.0
-5.4
phage
EV219
-1.5
-2.5
-0.0
-1.3
-5.1
phage
Bas68
-2.4
-4.7
+0.1
+0.2
-2.4
phage
Bas27
-0.5
-1.0
-0.3
-2.2
-4.9
phage
Bas10
-1.1
-1.1
-0.9
-2.0
-3.0
phage
P1vir
+5.8
+4.8
-7.8
-6.2
-4.4
carbon source
L-Rhamnose
-1.9
-3.9
+0.3
-1.1
-1.2
phage
Bas44
-1.4
-1.5
-1.0
-1.8
-1.8
phage
Bas05
-1.1
-3.1
-0.8
-1.0
-1.7
carbon source
L-Rhamnose
+0.4
-3.1
-1.3
-0.9
-2.4
phage
JK16
-1.2
-1.1
-0.6
-1.1
-3.3
phage
Bas68
-4.5
-2.8
+0.1
+0.1
-0.2
phage
JK16
-0.6
-1.9
-0.8
-1.1
-2.5
phage
Bas22
-1.1
-2.5
-0.8
-1.0
-1.3
phage
Bas05
-1.1
-1.7
-1.1
-1.0
-1.9
phage
Bas44
-0.3
-1.3
-0.6
-1.7
-2.2
phage
Phi92
-1.3
+2.4
-0.6
-0.4
+1.4
phage
Bas38
-0.8
+2.8
+1.6
+1.5
-3.1
phage
Bas38
-0.5
+3.3
+1.4
+1.5
-1.6
phage
TP7
+1.2
+3.2
+2.7
+2.4
+1.1
phage
TP7
+1.3
+3.5
+3.0
+2.9
+2.4
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