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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20450 and ECOLIN_RS20455 are separated by 22 nucleotides
ECOLIN_RS20455 and ECOLIN_RS20460 are separated by 113 nucleotides
ECOLIN_RS20460 and ECOLIN_RS20465 are separated by 2 nucleotides
ECOLIN_RS20465 and ECOLIN_RS20470 are separated by 12 nucleotides
ECOLIN_RS20450: ECOLIN_RS20450 - YhcH/YjgK/YiaL family protein, at 4,114,622 to 4,115,086
_RS20450
ECOLIN_RS20455: ECOLIN_RS20455 - DUF4862 family protein, at 4,115,109 to 4,116,029
_RS20455
ECOLIN_RS20460: ECOLIN_RS20460 - 2,3-diketo-L-gulonate TRAP transporter small permease YiaM, at 4,116,143 to 4,116,610
_RS20460
ECOLIN_RS20465: ECOLIN_RS20465 - 2,3-diketo-L-gulonate TRAP transporter large permease YiaN, at 4,116,613 to 4,117,890
_RS20465
ECOLIN_RS20470: ECOLIN_RS20470 - 2,3-diketo-L-gulonate TRAP transporter substrate-binding protein YiaO, at 4,117,903 to 4,118,889
_RS20470
Group
Condition
ECOLIN
_RS20450
ECOLIN
_RS20455
ECOLIN
_RS20460
ECOLIN
_RS20465
ECOLIN
_RS20470
phage
RB51
-0.7
-0.2
-0.4
-0.0
-0.1
phage
Bas68
-0.3
-0.1
-0.5
+0.1
-0.4
phage
Bas10
-0.4
-0.0
-0.4
+0.0
-0.1
phage
Bas04
-0.5
-0.1
-0.0
+0.0
-0.2
phage
Bas52
-0.1
-0.1
-0.1
-0.1
-0.2
phage
Bas22
-0.2
-0.2
-0.2
-0.0
+0.1
phage
K20
-0.0
-0.1
-0.3
+0.1
-0.2
phage
K25
-0.4
+0.1
-0.2
+0.1
-0.1
phage
RB68
-0.1
-0.3
+0.1
+0.1
-0.3
no phage control
Control_Nissle
+0.3
-0.0
-0.6
-0.1
-0.1
carbon source
L-Rhamnose
-0.4
+0.0
-0.2
+0.0
+0.2
phage
K20
-0.3
+0.0
-0.3
+0.2
+0.0
phage
Bas31
-0.2
+0.1
-0.1
-0.1
-0.0
phage
Bas63
+0.1
+0.1
-0.5
+0.0
-0.1
phage
EV219
-0.4
+0.1
+0.2
+0.1
-0.3
phage
JK38
-0.3
+0.0
+0.1
+0.0
-0.1
phage
Bas22
-0.1
-0.2
+0.1
-0.3
+0.2
phage
Phi92
-0.0
+0.3
-0.4
+0.1
-0.2
phage
Bas21
-0.4
+0.3
-0.0
+0.1
-0.1
phage
CEV1
-0.4
+0.2
+0.2
+0.0
-0.1
phage
Bas21
-0.4
+0.2
+0.2
+0.1
-0.1
phage
Phi92
-0.3
+0.1
+0.1
+0.3
-0.1
phage
JK16
-0.2
-0.1
+0.1
+0.1
+0.2
carbon source
Casamino-acids
+0.2
+0.1
-0.4
+0.1
+0.2
carbon source
D-Glucose
+0.0
+0.1
-0.3
+0.2
+0.1
phage
EV219
-0.2
-0.0
+0.4
+0.1
-0.0
phage
JK38
-0.2
+0.1
+0.3
+0.0
+0.1
phage
Bas63
+0.3
+0.2
+0.1
-0.0
-0.1
phage
Bas45
+0.4
-0.3
+0.2
+0.1
+0.2
carbon source
L-Rhamnose
+0.1
-0.2
+0.3
+0.3
+0.5
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