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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20420 and ECOLIN_RS20425 are separated by 177 nucleotides
ECOLIN_RS20425 and ECOLIN_RS20435 are separated by 151 nucleotides
ECOLIN_RS20435 and ECOLIN_RS20440 are separated by 101 nucleotides
ECOLIN_RS20440 and ECOLIN_RS20445 are separated by 200 nucleotides
ECOLIN_RS20420: ECOLIN_RS20420 - alpha-amylase, at 4,108,375 to 4,110,405
_RS20420
ECOLIN_RS20425: ECOLIN_RS20425 - valine--pyruvate transaminase, at 4,110,583 to 4,111,836
_RS20425
ECOLIN_RS20435: ECOLIN_RS20435 - 4Fe-4S binding protein, at 4,111,988 to 4,112,461
_RS20435
ECOLIN_RS20440: ECOLIN_RS20440 - IclR family transcriptional regulator YiaJ, at 4,112,563 to 4,113,411
_RS20440
ECOLIN_RS20445: ECOLIN_RS20445 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,113,612 to 4,114,610
_RS20445
Group
Condition
ECOLIN
_RS20420
ECOLIN
_RS20425
ECOLIN
_RS20435
ECOLIN
_RS20440
ECOLIN
_RS20445
carbon source
D-Glucose
-0.1
-0.2
-0.6
-0.2
+0.2
carbon source
L-Arabinose
-0.1
-0.2
-0.0
-0.4
-0.1
carbon source
L-Arabinose
-0.1
-0.2
+0.0
-0.3
-0.1
phage
Bas68
+0.0
-0.1
-0.1
-0.2
-0.2
carbon source
Casamino-acids
+0.1
+0.1
-0.4
-0.4
+0.1
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.2
-0.2
+0.1
carbon source
Casamino-acids
+0.1
+0.1
-0.2
-0.3
+0.1
phage
Bas52
-0.0
+0.0
-0.3
+0.2
-0.0
phage
RB51
+0.1
+0.0
+0.2
-0.0
-0.3
phage
Bas45
-0.3
+0.1
+0.2
+0.1
-0.1
phage
Bas22
+0.1
-0.1
+0.3
-0.2
-0.1
phage
Bas10
+0.0
-0.1
+0.2
-0.2
+0.1
phage
Bas22
+0.1
-0.1
+0.3
+0.0
-0.2
phage
Phi92
+0.1
+0.0
+0.1
-0.3
+0.2
phage
Phi92
+0.1
-0.1
+0.1
-0.0
+0.2
carbon source
L-Rhamnose
-0.2
+0.2
+0.1
+0.5
-0.2
phage
JK16
+0.1
-0.0
+0.2
-0.1
+0.2
phage
P1vir
+0.1
+0.3
-0.2
+0.2
-0.0
phage
Bas38
+0.2
+0.1
+0.1
+0.1
+0.1
phage
Bas05
+0.1
-0.0
+0.2
+0.2
+0.2
phage
Bas37
+0.1
+0.1
+0.3
+0.1
+0.1
phage
Bas38
+0.2
+0.2
+0.1
+0.1
+0.1
carbon source
L-Rhamnose
+0.1
+0.6
+0.0
-0.0
-0.0
phage
EV219
+0.1
+0.1
+0.3
+0.1
+0.0
phage
EV219
+0.0
+0.1
+0.3
+0.4
+0.1
phage
Bas37
+0.1
+0.0
+0.3
+0.3
+0.1
phage
Bas21
+0.4
-0.1
+0.3
+0.2
+0.1
phage
Bas27
+0.2
-0.1
+0.4
+0.2
+0.1
phage
Bas21
+0.4
+0.0
+0.3
-0.0
+0.2
phage
Bas31
+0.1
+0.1
+0.2
+0.5
+0.1
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