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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20375 and ECOLIN_RS20380 are separated by 45 nucleotides
ECOLIN_RS20380 and ECOLIN_RS20385 are separated by 168 nucleotides
ECOLIN_RS20385 and ECOLIN_RS20390 are separated by 71 nucleotides
ECOLIN_RS20390 and ECOLIN_RS20395 are separated by 365 nucleotides
ECOLIN_RS20375: ECOLIN_RS20375 - inner membrane protein YiaA, at 4,097,890 to 4,098,327
_RS20375
ECOLIN_RS20380: ECOLIN_RS20380 - inner membrane protein YiaB, at 4,098,373 to 4,098,714
_RS20380
ECOLIN_RS20385: ECOLIN_RS20385 - xylulokinase, at 4,098,883 to 4,100,337
_RS20385
ECOLIN_RS20390: ECOLIN_RS20390 - xylose isomerase, at 4,100,409 to 4,101,731
_RS20390
ECOLIN_RS20395: ECOLIN_RS20395 - D-xylose ABC transporter substrate-binding protein, at 4,102,097 to 4,103,089
_RS20395
Group
Condition
ECOLIN
_RS20375
ECOLIN
_RS20380
ECOLIN
_RS20385
ECOLIN
_RS20390
ECOLIN
_RS20395
phage
JK16
-0.9
-0.4
-0.0
-0.1
+0.3
phage
Bas21
-0.9
-0.1
+0.1
+0.0
-0.0
phage
Bas31
-0.3
-0.3
+0.0
+0.1
-0.2
phage
CEV1
-0.6
-0.3
+0.1
-0.1
+0.2
phage
Bas27
-0.8
-0.3
+0.0
-0.0
+0.5
phage
Bas10
-0.7
-0.0
-0.1
-0.0
+0.2
phage
EV219
-0.7
-0.1
+0.0
-0.1
+0.4
phage
Bas31
-0.8
+0.3
-0.1
-0.0
+0.1
phage
Bas27
-0.3
-0.4
+0.0
+0.0
+0.2
phage
Bas37
-0.4
-0.3
+0.1
-0.0
+0.1
phage
Bas10
-0.5
-0.1
-0.2
+0.0
+0.3
phage
JK38
-0.4
-0.2
+0.1
+0.0
+0.1
phage
JK16
-0.4
+0.1
-0.2
-0.0
+0.2
phage
Phi92
+0.5
-0.3
-0.1
-0.1
-0.3
phage
RB51
-0.3
-0.2
+0.2
-0.1
+0.3
phage
Bas04
-0.2
-0.2
+0.0
-0.0
+0.3
carbon source
L-Rhamnose
-0.3
-0.7
+0.3
+0.1
+0.6
phage
TP7
-0.4
-0.1
+0.2
-0.1
+0.3
phage
P1vir
+0.1
-0.4
+0.1
-0.3
+0.5
phage
Bas38
+0.1
-0.3
+0.1
-0.1
+0.2
carbon source
L-Arabinose
+0.3
-0.2
+0.1
-0.0
+0.2
carbon source
D-Glucose
+0.6
-0.0
+0.1
-0.2
-0.1
no phage control
Control_Nissle
+0.3
-0.2
+0.0
+0.2
+0.1
phage
Bas22
+0.4
-0.1
-0.1
+0.1
+0.1
phage
JK38
-0.2
-0.0
+0.1
+0.1
+0.5
phage
Bas44
+0.7
+0.3
+0.1
+0.0
-0.2
phage
K20
+0.5
+0.2
+0.0
+0.1
+0.1
carbon source
L-Rhamnose
+0.5
+0.8
-0.1
+0.1
-0.2
phage
Bas52
+0.6
+0.4
-0.1
-0.1
+0.1
phage
Bas45
+0.7
+0.3
+0.4
+0.0
-0.2
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