Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS20130 and ECOLIN_RS20135 are separated by 50 nucleotidesECOLIN_RS20135 and ECOLIN_RS20140 are separated by 519 nucleotidesECOLIN_RS20140 and ECOLIN_RS20145 are separated by 48 nucleotidesECOLIN_RS20145 and ECOLIN_RS20150 are separated by 392 nucleotides ECOLIN_RS20130: ECOLIN_RS20130 - alpha,alpha-trehalase, at 4,041,670 to 4,043,319 _RS20130 ECOLIN_RS20135: ECOLIN_RS20135 - response regulator transcription factor, at 4,043,370 to 4,043,972 _RS20135 ECOLIN_RS20140: ECOLIN_RS20140 - LysR family transcriptional regulator, at 4,044,492 to 4,045,391 _RS20140 ECOLIN_RS20145: ECOLIN_RS20145 - inner membrane protein YhjD, at 4,045,440 to 4,046,453 _RS20145 ECOLIN_RS20150: ECOLIN_RS20150 - MFS transporter, at 4,046,846 to 4,048,168 _RS20150
Group Condition ECOLIN_RS20130 ECOLIN_RS20135 ECOLIN_RS20140 ECOLIN_RS20145 ECOLIN_RS20150
carbon source L-Rhamnose +0.1 +0.4 -0.4 -0.4 -0.2
phage RB68 +0.1 -0.2 -0.0 -0.1 -0.1
phage Bas31 +0.1 -0.1 +0.1 -0.3 -0.0
phage K20 +0.1 +0.0 -0.2 -0.3 +0.1
phage K25 +0.1 +0.0 -0.1 -0.4 +0.2
carbon source L-Rhamnose +0.2 +0.2 -0.1 -0.5 +0.0
phage TP7 +0.0 -0.1 +0.1 -0.2 +0.0
phage Bas21 +0.0 +0.2 +0.0 -0.2 -0.2
phage EV219 -0.1 -0.3 -0.0 +0.3 -0.0
phage Bas21 +0.1 -0.2 +0.1 -0.1 +0.0
phage Phi92 +0.1 -0.1 +0.0 +0.1 -0.2
carbon source Casamino-acids +0.1 +0.1 -0.0 -0.3 +0.1
carbon source L-Arabinose +0.0 +0.1 +0.2 -0.2 -0.1
carbon source L-Arabinose +0.2 -0.0 +0.1 -0.1 -0.1
phage K20 -0.1 -0.0 -0.0 +0.4 -0.1
phage JK16 +0.0 -0.1 -0.0 +0.4 -0.1
phage Bas04 +0.1 +0.0 -0.1 +0.2 -0.1
phage CEV1 +0.1 -0.1 +0.1 +0.1 +0.0
phage Bas52 -0.1 -0.1 +0.2 +0.1 +0.0
phage Bas37 +0.1 +0.1 +0.2 -0.1 +0.0
phage TP7 +0.1 -0.1 +0.3 +0.1 -0.1
phage Bas45 +0.2 -0.1 +0.4 -0.3 +0.2
phage P1vir +0.0 -0.1 +0.1 +0.3 +0.1
phage Bas63 +0.0 -0.0 +0.2 +0.3 -0.1
no phage control Control_Nissle -0.1 +0.1 +0.2 -0.0 +0.3
carbon source D-Glucose +0.3 +0.0 +0.2 +0.1 -0.1
phage Bas05 +0.1 -0.1 +0.2 +0.2 +0.0
phage Bas44 +0.1 -0.0 +0.1 +0.2 +0.1
phage Bas38 +0.2 -0.1 +0.1 +0.3 -0.0
phage Bas04 +0.2 +0.0 +0.0 +0.2 +0.3
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