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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS20125 and ECOLIN_RS20130 are separated by 404 nucleotides
ECOLIN_RS20130 and ECOLIN_RS20135 are separated by 50 nucleotides
ECOLIN_RS20135 and ECOLIN_RS20140 are separated by 519 nucleotides
ECOLIN_RS20140 and ECOLIN_RS20145 are separated by 48 nucleotides
ECOLIN_RS20125: ECOLIN_RS20125 - cytochrome c peroxidase, at 4,039,868 to 4,041,265
_RS20125
ECOLIN_RS20130: ECOLIN_RS20130 - alpha,alpha-trehalase, at 4,041,670 to 4,043,319
_RS20130
ECOLIN_RS20135: ECOLIN_RS20135 - response regulator transcription factor, at 4,043,370 to 4,043,972
_RS20135
ECOLIN_RS20140: ECOLIN_RS20140 - LysR family transcriptional regulator, at 4,044,492 to 4,045,391
_RS20140
ECOLIN_RS20145: ECOLIN_RS20145 - inner membrane protein YhjD, at 4,045,440 to 4,046,453
_RS20145
Group
Condition
ECOLIN
_RS20125
ECOLIN
_RS20130
ECOLIN
_RS20135
ECOLIN
_RS20140
ECOLIN
_RS20145
phage
K25
-0.0
+0.1
+0.0
-0.1
-0.4
carbon source
L-Rhamnose
-0.1
+0.2
+0.2
-0.1
-0.5
phage
JK16
-0.1
+0.0
-0.0
+0.0
-0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.0
-0.0
-0.1
-0.3
phage
K20
+0.1
+0.1
+0.0
-0.2
-0.3
phage
Bas31
+0.1
+0.1
-0.1
+0.1
-0.3
phage
EV219
-0.0
-0.1
-0.3
-0.0
+0.3
phage
TP7
+0.1
+0.0
-0.1
+0.1
-0.2
phage
Bas21
+0.0
+0.1
-0.2
+0.1
-0.1
carbon source
L-Rhamnose
+0.2
+0.1
+0.4
-0.4
-0.4
phage
Bas68
-0.1
-0.0
-0.1
+0.1
+0.1
phage
K20
-0.1
-0.1
-0.0
-0.0
+0.4
carbon source
Casamino-acids
+0.2
+0.1
+0.1
-0.0
-0.3
phage
Bas52
-0.1
-0.1
-0.1
+0.2
+0.1
carbon source
L-Arabinose
+0.1
+0.0
+0.1
+0.2
-0.2
phage
CEV1
+0.1
+0.2
-0.1
-0.1
+0.1
phage
P1vir
-0.1
+0.0
-0.1
+0.1
+0.3
phage
Bas45
+0.0
+0.2
-0.1
+0.4
-0.3
phage
JK16
-0.0
+0.0
-0.1
-0.0
+0.4
phage
CEV1
+0.1
+0.1
-0.1
+0.1
+0.1
carbon source
L-Arabinose
+0.1
+0.2
-0.0
+0.1
-0.1
phage
Bas37
+0.1
+0.1
+0.1
+0.2
-0.1
phage
TP7
-0.1
+0.1
-0.1
+0.3
+0.1
phage
Bas04
-0.1
+0.2
+0.0
+0.0
+0.2
phage
Bas38
+0.1
+0.2
+0.0
+0.1
-0.1
phage
Bas63
-0.1
+0.0
-0.0
+0.2
+0.3
phage
Bas05
+0.0
+0.1
-0.1
+0.2
+0.2
phage
Bas27
+0.1
+0.1
+0.1
+0.1
+0.1
carbon source
D-Glucose
+0.1
+0.3
+0.0
+0.2
+0.1
phage
Bas38
+0.2
+0.2
-0.1
+0.1
+0.3
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