Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS20105 and ECOLIN_RS20110 are separated by 362 nucleotidesECOLIN_RS20110 and ECOLIN_RS20115 are separated by 368 nucleotidesECOLIN_RS20115 and ECOLIN_RS20120 are separated by 367 nucleotidesECOLIN_RS20120 and ECOLIN_RS20125 are separated by 210 nucleotides ECOLIN_RS20105: ECOLIN_RS20105 - multidrug efflux pump RND permease MdtF, at 4,032,492 to 4,035,605 _RS20105 ECOLIN_RS20110: ECOLIN_RS20110 - acid resistance transcriptional activator GadW, at 4,035,968 to 4,036,696 _RS20110 ECOLIN_RS20115: ECOLIN_RS20115 - acid resistance transcriptional activator GadX, at 4,037,065 to 4,037,889 _RS20115 ECOLIN_RS20120: ECOLIN_RS20120 - glutamate decarboxylase, at 4,038,257 to 4,039,657 _RS20120 ECOLIN_RS20125: ECOLIN_RS20125 - cytochrome c peroxidase, at 4,039,868 to 4,041,265 _RS20125
Group Condition ECOLIN_RS20105 ECOLIN_RS20110 ECOLIN_RS20115 ECOLIN_RS20120 ECOLIN_RS20125
phage P1vir -0.0 +0.1 -0.7 N.D. -0.1
phage RB68 -0.0 -0.1 -0.7 N.D. +0.1
phage EV219 -0.0 -0.3 -0.4 N.D. -0.0
carbon source L-Rhamnose +0.1 -0.2 -0.4 N.D. -0.1
carbon source D-Glucose +0.1 -0.2 -0.6 N.D. +0.1
phage TP7 -0.1 -0.2 -0.2 N.D. -0.1
phage Bas68 +0.0 -0.2 -0.3 N.D. -0.1
phage Bas63 -0.1 +0.0 -0.4 N.D. -0.1
phage JK16 -0.0 -0.2 -0.2 N.D. -0.0
phage K20 -0.1 +0.0 -0.4 N.D. +0.1
no phage control Control_Nissle +0.1 +0.1 -0.5 N.D. +0.0
carbon source Sodium-DL-Lactate +0.0 -0.3 -0.1 N.D. +0.0
phage K25 +0.1 +0.1 -0.3 N.D. -0.2
phage CEV1 -0.1 -0.1 -0.2 N.D. +0.1
phage TP7 +0.0 -0.1 -0.3 N.D. +0.1
carbon source L-Arabinose +0.0 -0.2 -0.2 N.D. +0.1
carbon source Casamino-acids +0.0 +0.0 -0.5 N.D. +0.2
phage Bas38 -0.0 -0.1 -0.2 N.D. +0.2
phage Bas37 +0.0 -0.3 +0.0 N.D. +0.1
phage Bas31 +0.1 -0.1 -0.2 N.D. +0.2
phage Bas27 +0.0 -0.3 +0.1 N.D. +0.1
phage Bas37 +0.0 -0.2 +0.1 N.D. +0.1
phage RB51 +0.1 +0.2 -0.2 N.D. -0.0
phage Bas31 -0.0 -0.2 +0.2 N.D. +0.1
phage JK16 -0.0 +0.1 +0.2 N.D. -0.1
phage Phi92 -0.0 -0.3 +0.3 N.D. +0.1
phage K20 +0.1 -0.0 +0.2 N.D. -0.1
phage Bas52 +0.0 -0.1 +0.3 N.D. -0.1
carbon source L-Rhamnose +0.0 +0.4 -0.3 N.D. +0.2
phage RB51 +0.0 +0.0 +0.5 N.D. -0.0
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