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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS19980 and ECOLIN_RS19985 are separated by 7 nucleotides
ECOLIN_RS19985 and ECOLIN_RS19990 are separated by 202 nucleotides
ECOLIN_RS19990 and ECOLIN_RS19995 are separated by 71 nucleotides
ECOLIN_RS19995 and ECOLIN_RS20000 are separated by 53 nucleotides
ECOLIN_RS19980: ECOLIN_RS19980 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 4,009,671 to 4,010,423
_RS19980
ECOLIN_RS19985: ECOLIN_RS19985 - oligopeptidase A, at 4,010,431 to 4,012,473
_RS19985
ECOLIN_RS19990: ECOLIN_RS19990 - 23S rRNA (adenine(2030)-N(6))-methyltransferase, at 4,012,676 to 4,013,518
_RS19990
ECOLIN_RS19995: ECOLIN_RS19995 - glutathione-disulfide reductase, at 4,013,590 to 4,014,942
_RS19995
ECOLIN_RS20000: ECOLIN_RS20000 - damage-inducible type I toxin DinQ, at 4,014,996 to 4,015,079
_RS20000
Group
Condition
ECOLIN
_RS19980
ECOLIN
_RS19985
ECOLIN
_RS19990
ECOLIN
_RS19995
ECOLIN
_RS20000
phage
TP7
+0.4
+0.5
-0.1
-6.2
+0.1
phage
Bas45
-0.0
-1.5
-0.2
-2.2
-0.4
phage
JK38
+0.1
-0.5
-0.1
-3.6
+0.2
phage
TP7
+0.3
+0.4
-0.1
-4.3
+0.1
phage
Bas31
+0.0
-0.2
+0.1
-3.5
+0.1
phage
Bas37
+0.3
-0.1
-0.0
-3.5
+0.3
phage
Bas27
+0.2
-1.1
+0.0
-1.9
-0.2
phage
Bas63
+0.0
-0.8
-0.1
-1.9
-0.0
phage
Bas31
+0.0
+0.5
-0.0
-3.2
+0.1
phage
Bas38
-0.2
-0.2
-0.2
-2.2
+0.2
phage
Bas27
+0.2
-1.0
+0.1
-1.8
+0.0
phage
RB68
-0.6
-0.2
-0.2
-0.8
-0.4
phage
EV219
+0.0
+0.6
+0.1
-2.3
-0.1
phage
Bas22
+0.3
-1.1
-0.0
-1.2
+0.4
phage
Bas38
+0.1
-0.1
-0.1
-1.7
+0.2
phage
JK38
+0.1
+0.7
+0.1
-2.7
+0.2
phage
JK16
+0.5
-0.5
-0.1
-1.3
-0.2
phage
Bas37
+0.4
+0.8
-0.1
-2.5
+0.0
phage
Bas21
+0.5
+0.0
+0.0
-2.3
+0.2
phage
Bas48
+0.2
-0.5
+0.2
-1.1
-0.2
phage
CEV1
+0.3
+0.5
-0.2
-1.3
-0.4
phage
JK16
+0.3
+0.0
+0.1
-1.7
+0.1
phage
Bas04
+0.1
-0.7
-0.0
-0.8
+0.4
phage
Phi92
-0.1
+0.6
+0.0
-1.8
+0.3
phage
EV219
+0.4
+1.0
+0.1
-2.8
+0.4
phage
Phi92
+0.4
+0.6
-0.1
-1.4
-0.0
phage
Bas10
-0.3
+0.6
+0.1
-1.4
+0.4
phage
Bas21
+0.3
+0.6
+0.1
-1.5
+0.2
carbon source
L-Rhamnose
-0.5
-1.1
-0.2
+0.1
+1.5
carbon source
L-Rhamnose
-0.2
+2.1
-0.1
+0.3
+0.6
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