Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS19345 and ECOLIN_RS19350 are separated by 17 nucleotidesECOLIN_RS19350 and ECOLIN_RS19355 are separated by 106 nucleotidesECOLIN_RS19355 and ECOLIN_RS19360 are separated by 91 nucleotidesECOLIN_RS19360 and ECOLIN_RS19365 are separated by 56 nucleotides ECOLIN_RS19345: ECOLIN_RS19345 - ribulose-phosphate 3-epimerase, at 3,869,821 to 3,870,498 _RS19345 ECOLIN_RS19350: ECOLIN_RS19350 - adenine-specific DNA-methyltransferase, at 3,870,516 to 3,871,352 _RS19350 ECOLIN_RS19355: ECOLIN_RS19355 - cell division protein DamX, at 3,871,459 to 3,872,745 _RS19355 ECOLIN_RS19360: ECOLIN_RS19360 - 3-dehydroquinate synthase, at 3,872,837 to 3,873,925 _RS19360 ECOLIN_RS19365: ECOLIN_RS19365 - shikimate kinase AroK, at 3,873,982 to 3,874,503 _RS19365
Group Condition ECOLIN_RS19345 ECOLIN_RS19350 ECOLIN_RS19355 ECOLIN_RS19360 ECOLIN_RS19365
carbon source Sodium-DL-Lactate -3.8 -3.0 -0.2 -5.4 N.D.
carbon source Sodium-DL-Lactate -2.5 -3.0 -0.3 -6.0 N.D.
phage TP7 -1.1 -5.4 -1.0 -0.3 N.D.
phage JK38 -0.7 -5.5 -0.8 -0.9 N.D.
phage Bas44 -3.2 -3.2 -0.5 -0.4 N.D.
carbon source L-Arabinose -3.6 -1.4 +0.1 -2.0 N.D.
phage Bas48 -2.4 -3.5 -0.4 -0.2 N.D.
carbon source L-Rhamnose -1.9 -3.8 +0.0 -0.7 N.D.
phage Bas45 -0.6 -3.6 -1.5 -0.7 N.D.
carbon source L-Rhamnose -2.2 -2.8 -0.2 -0.9 N.D.
phage RB51 -2.1 -2.8 -0.2 -0.8 N.D.
carbon source Casamino-acids -0.7 -4.2 -0.2 -0.7 N.D.
carbon source D-Glucose +2.1 -1.6 -0.1 -6.0 N.D.
phage Bas44 -2.1 -2.8 -0.6 +0.1 N.D.
phage Bas31 -1.3 -3.3 -0.5 -0.3 N.D.
carbon source L-Arabinose -2.1 -2.2 +0.2 -1.2 N.D.
phage K20 -2.3 -2.1 -0.4 -0.6 N.D.
carbon source D-Glucose +0.9 +0.7 +0.5 -7.4 N.D.
phage Bas10 -1.9 -2.3 -0.6 -0.2 N.D.
phage Bas37 -1.3 -3.5 -0.3 +0.1 N.D.
phage CEV1 -1.1 -2.6 -0.7 -0.5 N.D.
phage CEV1 -0.5 -2.9 -0.7 -0.9 N.D.
phage JK16 -1.0 -3.0 -0.3 -0.5 N.D.
phage Bas05 -0.8 -2.8 -0.5 -0.5 N.D.
phage EV219 -0.8 -3.2 -0.2 -0.4 N.D.
phage Bas10 -0.9 -2.6 -0.6 -0.4 N.D.
no phage control Control_Nissle -2.5 -1.6 -0.5 +0.2 N.D.
phage Bas22 -1.1 -3.1 -0.1 +0.4 N.D.
phage Bas21 -1.2 -3.6 +0.1 +1.5 N.D.
phage Bas38 +0.8 -3.1 +0.3 -0.3 N.D.
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