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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS19335 and ECOLIN_RS19340 overlap by 8 nucleotides
ECOLIN_RS19340 and ECOLIN_RS19345 overlap by 8 nucleotides
ECOLIN_RS19345 and ECOLIN_RS19350 are separated by 17 nucleotides
ECOLIN_RS19350 and ECOLIN_RS19355 are separated by 106 nucleotides
ECOLIN_RS19335: ECOLIN_RS19335 - tryptophan--tRNA ligase, at 3,868,073 to 3,869,077
_RS19335
ECOLIN_RS19340: ECOLIN_RS19340 - phosphoglycolate phosphatase, at 3,869,070 to 3,869,828
_RS19340
ECOLIN_RS19345: ECOLIN_RS19345 - ribulose-phosphate 3-epimerase, at 3,869,821 to 3,870,498
_RS19345
ECOLIN_RS19350: ECOLIN_RS19350 - adenine-specific DNA-methyltransferase, at 3,870,516 to 3,871,352
_RS19350
ECOLIN_RS19355: ECOLIN_RS19355 - cell division protein DamX, at 3,871,459 to 3,872,745
_RS19355
Group
Condition
ECOLIN
_RS19335
ECOLIN
_RS19340
ECOLIN
_RS19345
ECOLIN
_RS19350
ECOLIN
_RS19355
phage
TP7
N.D.
+0.0
-1.1
-5.4
-1.0
carbon source
Sodium-DL-Lactate
N.D.
-0.3
-3.8
-3.0
-0.2
phage
JK38
N.D.
-0.1
-0.7
-5.5
-0.8
phage
Bas44
N.D.
+0.1
-3.2
-3.2
-0.5
phage
Bas48
N.D.
+0.1
-2.4
-3.5
-0.4
carbon source
Sodium-DL-Lactate
N.D.
-0.2
-2.5
-3.0
-0.3
carbon source
L-Rhamnose
N.D.
-0.4
-1.9
-3.8
+0.0
carbon source
L-Rhamnose
N.D.
-0.8
-2.2
-2.8
-0.2
carbon source
Casamino-acids
N.D.
-0.6
-0.7
-4.2
-0.2
phage
Bas45
N.D.
+0.2
-0.6
-3.6
-1.5
phage
Bas44
N.D.
+0.2
-2.1
-2.8
-0.6
phage
Bas37
N.D.
+0.1
-1.3
-3.5
-0.3
phage
RB51
N.D.
+0.1
-2.1
-2.8
-0.2
phage
Bas31
N.D.
+0.1
-1.3
-3.3
-0.5
phage
Bas10
N.D.
-0.1
-1.9
-2.3
-0.6
carbon source
L-Arabinose
N.D.
+0.0
-3.6
-1.4
+0.1
phage
Bas21
N.D.
+0.0
-1.2
-3.6
+0.1
phage
CEV1
N.D.
-0.0
-1.1
-2.6
-0.7
phage
K20
N.D.
+0.3
-2.3
-2.1
-0.4
phage
JK16
N.D.
-0.0
-1.0
-3.0
-0.3
phage
CEV1
N.D.
-0.3
-0.5
-2.9
-0.7
phage
Bas10
N.D.
-0.1
-0.9
-2.6
-0.6
phage
Bas22
N.D.
+0.1
-1.1
-3.1
-0.1
no phage control
Control_Nissle
N.D.
+0.5
-2.5
-1.6
-0.5
phage
EV219
N.D.
+0.1
-0.8
-3.2
-0.2
carbon source
L-Arabinose
N.D.
+0.1
-2.1
-2.2
+0.2
phage
Bas05
N.D.
+0.1
-0.8
-2.8
-0.5
phage
K20
N.D.
+0.2
-2.3
-1.4
-0.2
phage
Bas38
N.D.
-0.3
+0.8
-3.1
+0.3
phage
Bas38
N.D.
-0.2
+0.6
-2.9
+0.3
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