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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS19325 and ECOLIN_RS19330 are separated by 16 nucleotides
ECOLIN_RS19330 and ECOLIN_RS19335 are separated by 154 nucleotides
ECOLIN_RS19335 and ECOLIN_RS19340 overlap by 8 nucleotides
ECOLIN_RS19340 and ECOLIN_RS19345 overlap by 8 nucleotides
ECOLIN_RS19325: ECOLIN_RS19325 - hypothetical protein, at 3,866,628 to 3,866,990
_RS19325
ECOLIN_RS19330: ECOLIN_RS19330 - GntR family transcriptional regulator YhfZ, at 3,867,007 to 3,867,918
_RS19330
ECOLIN_RS19335: ECOLIN_RS19335 - tryptophan--tRNA ligase, at 3,868,073 to 3,869,077
_RS19335
ECOLIN_RS19340: ECOLIN_RS19340 - phosphoglycolate phosphatase, at 3,869,070 to 3,869,828
_RS19340
ECOLIN_RS19345: ECOLIN_RS19345 - ribulose-phosphate 3-epimerase, at 3,869,821 to 3,870,498
_RS19345
Group
Condition
ECOLIN
_RS19325
ECOLIN
_RS19330
ECOLIN
_RS19335
ECOLIN
_RS19340
ECOLIN
_RS19345
carbon source
Sodium-DL-Lactate
-0.0
-0.1
N.D.
-0.3
-3.8
carbon source
L-Arabinose
+0.0
+0.0
N.D.
+0.0
-3.6
phage
Bas44
+0.0
+0.0
N.D.
+0.1
-3.2
carbon source
L-Rhamnose
+0.1
-0.0
N.D.
-0.8
-2.2
carbon source
Sodium-DL-Lactate
+0.1
-0.0
N.D.
-0.2
-2.5
carbon source
L-Rhamnose
+0.2
-0.3
N.D.
-0.4
-1.9
carbon source
L-Arabinose
-0.1
-0.0
N.D.
+0.1
-2.1
phage
JK16
-0.4
-0.1
N.D.
-0.2
-1.3
phage
Bas44
+0.0
-0.1
N.D.
+0.2
-2.1
phage
K20
-0.2
+0.2
N.D.
+0.3
-2.3
phage
Bas48
+0.1
+0.2
N.D.
+0.1
-2.4
phage
Bas10
-0.1
+0.2
N.D.
-0.1
-1.9
carbon source
Casamino-acids
-0.5
-0.2
N.D.
-0.6
-0.7
phage
K20
+0.0
+0.3
N.D.
+0.2
-2.3
no phage control
Control_Nissle
-0.0
+0.3
N.D.
+0.5
-2.5
phage
RB51
+0.1
+0.2
N.D.
+0.1
-2.1
phage
Phi92
-0.4
+0.0
N.D.
-0.0
-1.2
phage
Bas27
-0.2
-0.0
N.D.
+0.0
-1.4
phage
TP7
-0.3
+0.1
N.D.
+0.0
-1.1
phage
Bas37
-0.1
+0.1
N.D.
+0.1
-1.3
phage
Bas68
+0.1
+0.0
N.D.
+0.1
-1.3
phage
Bas05
-0.1
+0.6
N.D.
+0.0
-1.5
phage
CEV1
-0.2
+0.5
N.D.
-0.0
-1.1
phage
Bas21
-0.2
+0.5
N.D.
+0.0
-1.2
phage
Bas04
-0.1
+0.4
N.D.
+0.2
-1.1
phage
Bas31
-0.2
+0.8
N.D.
+0.1
-1.3
phage
Bas04
-0.2
+0.6
N.D.
-0.0
-0.8
phage
Bas51
+0.2
+0.6
N.D.
+0.1
-1.2
carbon source
D-Glucose
-0.3
-0.3
N.D.
-0.3
+0.9
carbon source
D-Glucose
-0.1
-0.0
N.D.
+0.3
+2.1
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