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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS18550 and ECOLIN_RS18555 are separated by 62 nucleotides
ECOLIN_RS18555 and ECOLIN_RS18560 are separated by 434 nucleotides
ECOLIN_RS18560 and ECOLIN_RS18565 are separated by 363 nucleotides
ECOLIN_RS18565 and ECOLIN_RS18570 are separated by 54 nucleotides
ECOLIN_RS18550: ECOLIN_RS18550 - outer membrane-stress sensor serine endopeptidase DegS, at 3,736,026 to 3,737,093
_RS18550
ECOLIN_RS18555: ECOLIN_RS18555 - malate dehydrogenase, at 3,737,156 to 3,738,094
_RS18555
ECOLIN_RS18560: ECOLIN_RS18560 - transcriptional regulator ArgR, at 3,738,529 to 3,738,999
_RS18560
ECOLIN_RS18565: ECOLIN_RS18565 - peroxide/acid stress response protein YhcN, at 3,739,363 to 3,739,626
_RS18565
ECOLIN_RS18570: ECOLIN_RS18570 - barstar family protein, at 3,739,681 to 3,739,953
_RS18570
Group
Condition
ECOLIN
_RS18550
ECOLIN
_RS18555
ECOLIN
_RS18560
ECOLIN
_RS18565
ECOLIN
_RS18570
carbon source
Casamino-acids
-1.6
-3.1
-0.1
+0.0
+0.1
phage
CEV1
-0.6
-1.6
-1.4
-0.0
-0.3
carbon source
Sodium-DL-Lactate
-0.9
-1.4
-0.5
-0.1
-0.1
carbon source
L-Rhamnose
-0.2
-1.4
-0.3
-0.6
-0.4
phage
EV219
-0.4
-0.9
-1.0
-0.2
-0.2
carbon source
Casamino-acids
-0.3
-2.2
-0.3
-0.3
+0.5
phage
Bas04
-1.7
+0.0
-1.0
-0.0
+0.2
carbon source
L-Rhamnose
-1.8
-0.5
-0.0
+0.5
-0.6
phage
JK38
+0.6
-1.8
-1.1
+0.0
+0.1
phage
TP7
+0.3
-1.9
-0.6
-0.1
+0.2
phage
JK16
-1.6
+0.1
-1.0
+0.1
+0.2
phage
Bas63
-1.2
+0.0
-0.8
-0.1
+0.1
phage
K20
-1.4
-0.2
-0.5
-0.0
+0.3
phage
Bas48
-1.5
+0.5
-0.6
+0.0
-0.2
phage
RB51
-1.3
-0.1
+0.2
-0.7
+0.4
phage
EV219
-0.3
-0.1
-1.2
+0.5
-0.2
phage
Phi92
-0.3
-0.2
-1.0
-0.1
+0.4
phage
Bas48
-1.0
+0.3
-0.2
-0.5
+0.1
phage
Bas04
-0.2
+0.2
-1.3
-0.0
+0.2
phage
Bas31
-0.8
+0.4
-1.3
+0.2
+0.3
phage
Bas27
-1.2
+0.2
-1.0
+0.3
+0.5
carbon source
L-Arabinose
-1.2
+0.1
-0.2
+0.3
+0.1
phage
CEV1
-0.6
+0.3
-0.9
+0.1
+0.2
phage
Bas05
-0.1
+0.4
-1.2
+0.3
-0.0
phage
K25
+0.3
+0.3
-0.9
-0.4
+0.4
phage
Bas37
+0.9
+0.3
-0.6
-0.1
-0.1
phage
Bas38
+0.7
+0.3
-0.7
+0.3
-0.0
phage
Bas37
+0.8
+0.5
-0.7
-0.1
+0.3
carbon source
D-Glucose
+1.1
-0.4
+0.2
+0.4
+0.6
phage
Bas45
+2.4
-0.7
-0.4
+0.5
+0.5
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