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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS18055 and ECOLIN_RS18060 are separated by 12 nucleotides
ECOLIN_RS18060 and ECOLIN_RS18065 are separated by 166 nucleotides
ECOLIN_RS18065 and ECOLIN_RS18070 are separated by 38 nucleotides
ECOLIN_RS18070 and ECOLIN_RS18075 overlap by 11 nucleotides
ECOLIN_RS18055: ECOLIN_RS18055 - AgaS family sugar isomerase, at 3,640,638 to 3,641,792
_RS18055
ECOLIN_RS18060: ECOLIN_RS18060 - tagatose-bisphosphate aldolase subunit KbaY, at 3,641,805 to 3,642,665
_RS18060
ECOLIN_RS18065: ECOLIN_RS18065 - PTS galactosamine transporter subunit IIB, at 3,642,832 to 3,643,308
_RS18065
ECOLIN_RS18070: ECOLIN_RS18070 - PTS galactosamine transporter subunit IIC, at 3,643,347 to 3,644,150
_RS18070
ECOLIN_RS18075: ECOLIN_RS18075 - PTS galactosamine transporter subunit IID, at 3,644,140 to 3,644,931
_RS18075
Group
Condition
ECOLIN
_RS18055
ECOLIN
_RS18060
ECOLIN
_RS18065
ECOLIN
_RS18070
ECOLIN
_RS18075
no phage control
Control_Nissle
-0.2
-0.1
N.D.
-0.2
-0.1
carbon source
D-Glucose
-0.4
-0.2
N.D.
+0.1
-0.1
phage
Bas68
-0.1
-0.4
N.D.
-0.1
-0.1
phage
RB51
-0.1
-0.1
N.D.
-0.1
-0.2
phage
Bas52
-0.1
-0.0
N.D.
-0.4
-0.1
phage
K25
+0.1
-0.4
N.D.
-0.0
-0.2
phage
Bas21
-0.2
-0.4
N.D.
+0.1
+0.0
phage
RB51
-0.3
+0.1
N.D.
-0.1
-0.1
phage
Bas45
-0.3
+0.1
N.D.
-0.2
+0.0
phage
Bas44
-0.2
+0.2
N.D.
-0.0
-0.2
phage
RB68
+0.2
-0.3
N.D.
-0.1
-0.1
phage
EV219
-0.1
-0.3
N.D.
-0.1
+0.2
phage
JK38
-0.2
-0.2
N.D.
+0.0
+0.2
phage
Bas22
-0.2
+0.2
N.D.
-0.2
+0.1
phage
Bas31
-0.1
-0.3
N.D.
+0.1
+0.1
phage
K20
-0.3
+0.2
N.D.
+0.0
-0.1
phage
P1vir
-0.2
+0.1
N.D.
-0.2
+0.1
phage
EV219
-0.1
-0.4
N.D.
+0.2
+0.2
phage
CEV1
-0.1
-0.2
N.D.
+0.2
+0.0
carbon source
Casamino-acids
+0.1
-0.2
N.D.
+0.2
-0.1
phage
Bas52
-0.3
+0.3
N.D.
-0.0
+0.1
phage
Bas21
+0.1
-0.4
N.D.
+0.1
+0.2
phage
Bas38
-0.3
+0.2
N.D.
+0.2
+0.1
carbon source
Sodium-DL-Lactate
+0.1
-0.1
N.D.
+0.2
-0.1
phage
Bas37
-0.0
-0.3
N.D.
+0.3
+0.3
carbon source
Casamino-acids
+0.0
+0.2
N.D.
+0.3
-0.1
carbon source
L-Arabinose
-0.2
+0.3
N.D.
+0.2
+0.0
phage
Bas22
-0.0
+0.5
N.D.
+0.2
-0.1
carbon source
L-Rhamnose
+0.2
+0.6
N.D.
-0.1
-0.0
carbon source
L-Rhamnose
-0.3
+0.8
N.D.
+0.4
+0.2
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