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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17955 and ECOLIN_RS17960 are separated by 96 nucleotides
ECOLIN_RS17960 and ECOLIN_RS17965 are separated by 29 nucleotides
ECOLIN_RS17965 and ECOLIN_RS17970 are separated by 15 nucleotides
ECOLIN_RS17970 and ECOLIN_RS17975 are separated by 374 nucleotides
ECOLIN_RS17955: ECOLIN_RS17955 - glycerate 2-kinase, at 3,621,712 to 3,622,857
_RS17955
ECOLIN_RS17960: ECOLIN_RS17960 - 2-hydroxy-3-oxopropionate reductase, at 3,622,954 to 3,623,844
_RS17960
ECOLIN_RS17965: ECOLIN_RS17965 - 2-dehydro-3-deoxyglucarate aldolase, at 3,623,874 to 3,624,644
_RS17965
ECOLIN_RS17970: ECOLIN_RS17970 - galactarate/glucarate/glycerate transporter GarP, at 3,624,660 to 3,625,994
_RS17970
ECOLIN_RS17975: ECOLIN_RS17975 - galactarate dehydratase, at 3,626,369 to 3,627,940
_RS17975
Group
Condition
ECOLIN
_RS17955
ECOLIN
_RS17960
ECOLIN
_RS17965
ECOLIN
_RS17970
ECOLIN
_RS17975
phage
JK38
-1.1
+0.2
-0.2
-0.1
N.D.
phage
P1vir
-1.1
+0.2
+0.1
-0.4
N.D.
no phage control
Control_Nissle
-0.4
-0.0
-0.5
-0.1
N.D.
phage
Bas37
-0.6
+0.1
-0.2
-0.1
N.D.
phage
Bas44
-0.4
-0.2
-0.1
-0.1
N.D.
phage
Bas31
-0.5
+0.1
-0.2
-0.3
N.D.
phage
Bas38
-0.8
+0.1
+0.1
-0.1
N.D.
phage
TP7
-0.5
+0.2
+0.1
-0.2
N.D.
carbon source
L-Arabinose
-0.2
-0.1
+0.2
-0.4
N.D.
phage
TP7
-0.9
+0.5
+0.1
-0.1
N.D.
phage
Bas38
-1.0
+0.4
+0.3
-0.1
N.D.
phage
Bas52
-0.5
-0.0
+0.2
-0.1
N.D.
carbon source
L-Rhamnose
-0.9
+0.2
+0.1
+0.2
N.D.
phage
K25
-0.2
+0.1
-0.4
+0.1
N.D.
phage
JK38
-0.5
+0.3
-0.1
+0.0
N.D.
carbon source
Casamino-acids
-0.2
-0.3
+0.2
-0.2
N.D.
phage
CEV1
-0.3
-0.2
+0.2
-0.1
N.D.
phage
Bas37
-0.6
+0.1
+0.2
-0.0
N.D.
phage
Bas21
-0.7
+0.2
+0.3
-0.1
N.D.
phage
Bas21
-0.3
+0.4
-0.2
-0.1
N.D.
phage
Bas31
-0.4
+0.4
+0.0
-0.3
N.D.
phage
Bas63
-0.3
+0.2
-0.3
+0.1
N.D.
phage
JK16
-0.7
+0.6
-0.1
-0.1
N.D.
carbon source
D-Glucose
-0.1
-0.1
+0.4
-0.3
N.D.
carbon source
Casamino-acids
-0.4
+0.1
+0.3
-0.1
N.D.
phage
CEV1
-0.5
+0.4
+0.4
-0.2
N.D.
carbon source
L-Arabinose
-0.6
-0.1
+0.9
-0.2
N.D.
phage
Bas27
-0.4
+0.4
+0.1
-0.1
N.D.
carbon source
L-Rhamnose
-0.5
+0.5
+0.3
-0.2
N.D.
phage
Phi92
-0.1
+0.3
+0.2
-0.2
N.D.
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