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Protein
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Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17915 and ECOLIN_RS17920 are separated by 71 nucleotides
ECOLIN_RS17920 and ECOLIN_RS17925 are separated by 13 nucleotides
ECOLIN_RS17925 and ECOLIN_RS17930 are separated by 33 nucleotides
ECOLIN_RS17930 and ECOLIN_RS17935 are separated by 25 nucleotides
ECOLIN_RS17915: ECOLIN_RS17915 - L-serine ammonia-lyase, at 3,611,433 to 3,612,797
_RS17915
ECOLIN_RS17920: ECOLIN_RS17920 - enamine/imine deaminase, at 3,612,869 to 3,613,258
_RS17920
ECOLIN_RS17925: ECOLIN_RS17925 - 2-ketobutyrate formate-lyase/pyruvate formate-lyase, at 3,613,272 to 3,615,566
_RS17925
ECOLIN_RS17930: ECOLIN_RS17930 - propionate kinase, at 3,615,600 to 3,616,808
_RS17930
ECOLIN_RS17935: ECOLIN_RS17935 - threonine/serine transporter TdcC, at 3,616,834 to 3,618,165
_RS17935
Group
Condition
ECOLIN
_RS17915
ECOLIN
_RS17920
ECOLIN
_RS17925
ECOLIN
_RS17930
ECOLIN
_RS17935
phage
Bas21
-0.2
-0.3
-0.3
-0.3
-0.1
phage
Bas21
-0.1
-0.2
-0.2
-0.2
-0.3
phage
EV219
-0.0
-0.5
-0.2
-0.2
+0.1
carbon source
L-Rhamnose
+0.0
+0.0
-0.4
-0.3
-0.1
phage
CEV1
+0.1
-0.0
-0.2
-0.1
-0.5
phage
Bas22
-0.1
-0.4
-0.2
-0.1
+0.3
phage
Bas38
-0.0
-0.5
-0.1
-0.2
+0.3
phage
Bas27
+0.0
-0.1
-0.3
-0.4
+0.2
phage
Bas05
-0.1
-0.1
-0.2
-0.2
+0.2
phage
P1vir
+0.1
-0.3
-0.2
-0.3
+0.5
phage
Bas37
+0.0
-0.3
-0.3
-0.1
+0.3
phage
JK38
-0.1
-0.3
-0.2
-0.1
+0.4
phage
Bas52
-0.1
+0.2
-0.1
+0.2
-0.4
carbon source
D-Glucose
+0.0
+0.4
-0.1
-0.3
-0.2
phage
Bas31
-0.1
-0.4
-0.1
+0.3
+0.1
phage
Bas51
-0.0
+0.2
-0.1
-0.3
+0.1
carbon source
L-Rhamnose
+0.3
+0.2
-0.6
+0.3
-0.4
phage
Bas04
+0.2
-0.1
-0.3
-0.1
+0.3
phage
Bas45
-0.1
-0.4
-0.1
+0.3
+0.3
phage
TP7
+0.1
-0.2
-0.1
-0.5
+0.7
phage
JK38
-0.2
-0.1
-0.1
-0.1
+0.7
phage
Bas05
-0.2
-0.2
-0.2
+0.1
+0.7
phage
RB68
-0.0
-0.1
+0.0
-0.2
+0.6
phage
Bas10
-0.1
-0.0
-0.3
+0.0
+0.6
phage
Bas63
+0.1
+0.4
-0.1
-0.2
+0.0
phage
CEV1
-0.1
+0.0
-0.1
+0.1
+0.5
phage
Bas27
+0.2
-0.1
-0.1
-0.1
+0.6
phage
RB51
+0.1
+0.2
+0.0
-0.2
+0.3
phage
Bas68
-0.0
+0.1
+0.2
-0.0
+0.5
phage
Phi92
+0.0
+0.4
-0.0
+0.4
+0.2
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