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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17865 and ECOLIN_RS17870 overlap by 11 nucleotides
ECOLIN_RS17870 and ECOLIN_RS17875 are separated by 186 nucleotides
ECOLIN_RS17875 and ECOLIN_RS17880 are separated by 69 nucleotides
ECOLIN_RS17880 and ECOLIN_RS17885 are separated by 282 nucleotides
ECOLIN_RS17865: ECOLIN_RS17865 - phage holin family protein, at 3,603,446 to 3,603,850
_RS17865
ECOLIN_RS17870: ECOLIN_RS17870 - YqjK-like family protein, at 3,603,840 to 3,604,139
_RS17870
ECOLIN_RS17875: ECOLIN_RS17875 - DoxX family protein, at 3,604,326 to 3,604,718
_RS17875
ECOLIN_RS17880: ECOLIN_RS17880 - glutathionyl-hydroquinone reductase YqjG, at 3,604,788 to 3,605,776
_RS17880
ECOLIN_RS17885: ECOLIN_RS17885 - DUF805 domain-containing protein, at 3,606,059 to 3,606,427
_RS17885
Group
Condition
ECOLIN
_RS17865
ECOLIN
_RS17870
ECOLIN
_RS17875
ECOLIN
_RS17880
ECOLIN
_RS17885
phage
Bas63
-0.2
-0.6
-0.6
-0.1
-1.5
phage
Bas22
-0.6
-0.1
-0.3
-0.5
-1.3
phage
Bas45
-0.8
-0.1
-0.1
-0.1
-1.0
phage
K20
-0.2
+0.2
-0.0
-0.0
-1.8
no phage control
Control_Nissle
-0.3
+0.0
+0.3
-0.3
-1.5
carbon source
L-Arabinose
+0.2
-0.0
-0.0
-0.1
-1.7
phage
Bas63
-0.5
-0.0
-0.2
-0.0
-0.8
phage
P1vir
-0.3
+0.2
+0.5
-0.4
-1.6
phage
Bas21
-0.4
-0.0
-0.1
+0.0
-1.0
no phage control
Control_Nissle
-0.3
-0.3
-0.1
+0.1
-0.8
carbon source
L-Arabinose
-0.5
+0.1
-0.2
-0.2
-0.6
phage
Bas31
-0.3
-0.1
+0.0
+0.2
-1.2
phage
RB51
-0.2
-0.2
-0.1
+0.0
-0.9
phage
RB68
-0.0
+0.2
+0.2
-0.2
-1.2
phage
K25
-0.1
+0.2
-0.1
-0.1
-0.9
phage
RB51
-0.7
-0.1
+0.1
+0.1
-0.4
phage
Bas21
-0.0
+0.1
+0.4
-0.2
-1.1
carbon source
Sodium-DL-Lactate
-0.4
+0.3
-0.4
-0.2
-0.2
phage
Bas04
+0.3
+0.1
-0.0
-0.1
-1.0
phage
Bas68
-0.1
+0.4
+0.0
-0.3
-0.7
carbon source
Sodium-DL-Lactate
-0.2
+0.4
+0.1
-0.1
-0.7
phage
K25
-0.1
+0.2
+0.4
+0.1
-0.8
carbon source
Casamino-acids
+0.0
+0.3
+0.2
+0.1
-0.9
phage
Bas31
+0.0
-0.3
+0.5
+0.0
-0.5
phage
CEV1
+0.1
+0.2
-0.0
+0.4
-0.9
phage
JK38
-0.2
-0.1
-0.3
+0.1
+0.6
phage
Bas68
-0.1
+0.3
-0.1
-0.3
+0.8
phage
Bas48
-0.2
-0.5
-0.1
+0.0
+1.3
phage
Bas27
+0.0
-0.1
-0.1
+0.3
+1.2
carbon source
L-Rhamnose
+0.0
+0.4
-0.3
-0.1
+1.6
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