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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17845 and ECOLIN_RS17850 are separated by 3 nucleotides
ECOLIN_RS17850 and ECOLIN_RS17855 are separated by 146 nucleotides
ECOLIN_RS17855 and ECOLIN_RS17860 are separated by 37 nucleotides
ECOLIN_RS17860 and ECOLIN_RS17865 are separated by 2 nucleotides
ECOLIN_RS17845: ECOLIN_RS17845 - DedA family general envelope maintenance protein YqjA, at 3,601,536 to 3,602,198
_RS17845
ECOLIN_RS17850: ECOLIN_RS17850 - EnvZ/OmpR regulon moderator MzrA, at 3,602,202 to 3,602,585
_RS17850
ECOLIN_RS17855: ECOLIN_RS17855 - DUF1090 family protein YqjC, at 3,602,732 to 3,603,100
_RS17855
ECOLIN_RS17860: ECOLIN_RS17860 - YqjD family protein, at 3,603,138 to 3,603,443
_RS17860
ECOLIN_RS17865: ECOLIN_RS17865 - phage holin family protein, at 3,603,446 to 3,603,850
_RS17865
Group
Condition
ECOLIN
_RS17845
ECOLIN
_RS17850
ECOLIN
_RS17855
ECOLIN
_RS17860
ECOLIN
_RS17865
phage
Bas38
-2.2
-1.8
+0.4
-0.2
+0.2
phage
Bas38
-1.8
-1.3
+0.5
-0.2
-0.3
phage
Bas45
-1.7
-0.0
+0.0
+0.2
-0.8
phage
RB51
-0.6
-0.7
+0.1
+0.4
-0.7
phage
Bas22
-0.7
-0.2
-0.1
-0.0
-0.6
phage
RB51
-0.3
-0.8
-0.2
+0.0
-0.2
phage
Bas22
-0.5
+0.1
-0.1
+0.2
-0.5
no phage control
Control_Nissle
-0.1
-0.0
+0.3
-0.5
-0.3
carbon source
Casamino-acids
-0.4
+0.2
+0.3
-0.4
-0.3
phage
P1vir
-0.7
+0.5
+0.2
-0.2
-0.3
carbon source
L-Rhamnose
+0.7
+0.1
-0.3
-0.8
-0.2
carbon source
L-Rhamnose
+0.4
+0.0
-0.3
-0.5
+0.0
phage
Bas21
-0.8
+0.3
+0.4
+0.2
-0.4
phage
JK38
-0.3
+0.5
+0.2
-0.2
-0.3
carbon source
L-Arabinose
+0.4
+0.0
-0.2
-0.5
+0.2
phage
Bas21
-1.1
+0.2
+0.4
+0.5
-0.0
phage
CEV1
-0.6
-0.2
+0.3
+0.3
+0.1
phage
JK16
-0.2
+0.1
+0.4
-0.3
-0.1
phage
TP7
-0.3
+0.4
+0.2
+0.0
-0.2
phage
Bas37
-0.4
+0.4
+0.2
+0.1
-0.1
phage
Bas31
-0.3
+0.5
+0.1
+0.2
-0.3
phage
Bas05
-0.1
+0.5
+0.3
-0.1
-0.2
phage
JK38
-0.3
+0.5
+0.1
+0.3
-0.2
phage
Bas04
+0.0
+0.4
+0.3
-0.4
+0.1
phage
Bas27
-0.2
+0.3
-0.0
+0.6
-0.1
phage
EV219
+0.1
+0.4
+0.2
+0.5
-0.5
phage
Bas27
-0.2
+0.1
+0.2
+0.6
+0.0
phage
JK16
-0.2
+0.4
+0.5
+0.2
-0.1
phage
Phi92
-0.1
+0.7
+0.1
+0.3
+0.2
phage
EV219
+0.3
+0.4
+0.7
+0.5
+0.1
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