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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17825 and ECOLIN_RS17830 are separated by 14 nucleotides
ECOLIN_RS17830 and ECOLIN_RS17835 are separated by 482 nucleotides
ECOLIN_RS17835 and ECOLIN_RS17840 are separated by 129 nucleotides
ECOLIN_RS17840 and ECOLIN_RS33015 are separated by 239 nucleotides
ECOLIN_RS17825: ECOLIN_RS17825 - altronate dehydratase, at 3,595,590 to 3,597,077
_RS17825
ECOLIN_RS17830: ECOLIN_RS17830 - glucuronate isomerase, at 3,597,092 to 3,598,504
_RS17830
ECOLIN_RS17835: ECOLIN_RS17835 - hexuronate transporter ExuT, at 3,598,987 to 3,600,285
_RS17835
ECOLIN_RS17840: ECOLIN_RS17840 - transcriptional regulator ExuR, at 3,600,415 to 3,601,191
_RS17840
ECOLIN_RS33015: ECOLIN_RS33015 - hypothetical protein, at 3,601,431 to 3,601,514
_RS33015
Group
Condition
ECOLIN
_RS17825
ECOLIN
_RS17830
ECOLIN
_RS17835
ECOLIN
_RS17840
ECOLIN
_RS33015
phage
JK38
+0.1
-0.2
-0.2
-0.9
-0.2
phage
P1vir
+0.2
-0.1
+0.1
-1.1
-0.2
phage
Bas05
+0.2
-0.2
-0.2
-0.6
-0.1
phage
Bas22
-0.1
-0.1
-0.2
-0.3
-0.2
phage
Bas45
-0.1
+0.0
+0.2
-0.5
-0.5
phage
Bas21
+0.3
-0.2
-0.2
-0.7
+0.0
phage
JK16
-0.2
-0.1
+0.2
-0.4
-0.3
phage
Bas21
+0.1
-0.2
-0.1
-0.3
-0.2
phage
Bas04
+0.0
+0.1
-0.0
-0.6
-0.3
carbon source
Casamino-acids
-0.1
+0.0
-0.0
-0.6
+0.0
phage
Bas22
-0.0
-0.3
+0.1
-0.5
+0.1
phage
RB51
+0.0
-0.1
+0.1
-0.5
-0.1
carbon source
D-Glucose
-0.1
-0.2
+0.1
-0.2
-0.1
phage
Bas04
+0.3
-0.1
-0.2
-0.2
-0.2
no phage control
Control_Nissle
+0.0
-0.1
+0.1
-0.5
+0.1
phage
CEV1
+0.3
-0.1
-0.1
-0.3
-0.1
carbon source
Casamino-acids
+0.2
-0.0
+0.2
-0.6
-0.0
phage
EV219
+0.2
-0.1
+0.1
-0.3
-0.1
phage
Phi92
+0.3
-0.2
+0.0
-0.2
-0.2
carbon source
L-Rhamnose
-0.2
+0.2
+0.1
-0.2
-0.1
phage
K25
-0.2
-0.2
+0.1
-0.1
+0.3
phage
Bas48
-0.0
+0.1
+0.2
-0.1
-0.3
phage
Bas37
+0.0
-0.2
-0.1
+0.4
-0.2
phage
CEV1
+0.1
+0.1
+0.2
-0.3
-0.1
phage
JK38
+0.1
-0.0
+0.1
+0.3
-0.4
phage
Bas38
+0.2
+0.1
+0.1
-0.4
+0.1
phage
Bas38
+0.3
+0.2
+0.1
-0.4
+0.0
phage
Bas05
+0.0
+0.4
+0.0
+0.3
-0.4
phage
RB68
-0.2
+0.1
-0.1
+0.8
-0.0
carbon source
L-Rhamnose
-0.1
-0.0
+0.1
+0.4
+0.2
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