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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17815 and ECOLIN_RS17820 are separated by 3 nucleotides
ECOLIN_RS17820 and ECOLIN_RS17825 are separated by 82 nucleotides
ECOLIN_RS17825 and ECOLIN_RS17830 are separated by 14 nucleotides
ECOLIN_RS17830 and ECOLIN_RS17835 are separated by 482 nucleotides
ECOLIN_RS17815: ECOLIN_RS17815 - serine/threonine transporter SstT, at 3,593,708 to 3,594,952
_RS17815
ECOLIN_RS17820: ECOLIN_RS17820 - YgjV family protein, at 3,594,956 to 3,595,507
_RS17820
ECOLIN_RS17825: ECOLIN_RS17825 - altronate dehydratase, at 3,595,590 to 3,597,077
_RS17825
ECOLIN_RS17830: ECOLIN_RS17830 - glucuronate isomerase, at 3,597,092 to 3,598,504
_RS17830
ECOLIN_RS17835: ECOLIN_RS17835 - hexuronate transporter ExuT, at 3,598,987 to 3,600,285
_RS17835
Group
Condition
ECOLIN
_RS17815
ECOLIN
_RS17820
ECOLIN
_RS17825
ECOLIN
_RS17830
ECOLIN
_RS17835
carbon source
D-Glucose
-0.1
-0.1
-0.1
-0.2
+0.1
phage
K25
+0.1
+0.0
-0.2
-0.2
+0.1
phage
RB68
+0.1
-0.1
-0.2
+0.1
-0.1
phage
JK16
+0.2
-0.3
-0.2
-0.1
+0.2
no phage control
Control_Nissle
+0.3
-0.1
-0.0
-0.2
-0.1
phage
Bas04
+0.1
-0.1
+0.3
-0.1
-0.2
phage
Bas05
+0.3
-0.1
+0.2
-0.2
-0.2
phage
Bas52
+0.1
+0.2
-0.2
-0.2
-0.0
carbon source
L-Rhamnose
-0.1
+0.0
-0.2
+0.2
+0.1
phage
Bas45
+0.2
-0.3
-0.1
+0.0
+0.2
phage
JK38
+0.1
+0.1
+0.1
-0.2
-0.2
phage
Bas21
+0.3
+0.1
+0.1
-0.2
-0.1
phage
Phi92
+0.3
+0.0
+0.1
-0.2
-0.1
phage
Bas21
+0.3
-0.1
+0.3
-0.2
-0.2
phage
Bas22
+0.3
-0.0
-0.0
-0.3
+0.1
phage
Phi92
-0.1
+0.1
+0.3
-0.2
+0.0
phage
Bas27
+0.2
+0.2
+0.2
-0.3
-0.1
phage
K20
+0.3
+0.1
-0.2
+0.0
+0.0
phage
Bas31
+0.3
-0.0
+0.1
-0.0
-0.2
phage
Bas37
+0.4
+0.1
+0.0
-0.2
-0.1
phage
Bas51
+0.1
-0.1
-0.1
+0.2
+0.2
no phage control
Control_Nissle
+0.4
-0.1
+0.0
-0.1
+0.1
phage
EV219
+0.1
+0.1
+0.2
-0.1
+0.1
phage
CEV1
+0.4
-0.1
+0.3
-0.1
-0.1
carbon source
Casamino-acids
+0.2
-0.0
+0.2
-0.0
+0.2
phage
Bas37
+0.5
-0.0
+0.2
+0.0
-0.0
phage
Bas38
+0.3
+0.1
+0.2
+0.1
+0.1
phage
TP7
+0.2
+0.2
+0.1
+0.1
+0.1
phage
Bas05
+0.4
+0.0
+0.0
+0.4
+0.0
phage
Bas38
+0.3
+0.3
+0.3
+0.2
+0.1
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