Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS17670 and ECOLIN_RS17675 are separated by 206 nucleotidesECOLIN_RS17675 and ECOLIN_RS17680 overlap by 4 nucleotidesECOLIN_RS17680 and ECOLIN_RS17685 are separated by 47 nucleotidesECOLIN_RS17685 and ECOLIN_RS17690 are separated by 42 nucleotides ECOLIN_RS17670: ECOLIN_RS17670 - L-tartrate utilization transcriptional activator TtdR, at 3,559,664 to 3,560,596 _RS17670 ECOLIN_RS17675: ECOLIN_RS17675 - L(+)-tartrate dehydratase subunit alpha, at 3,560,803 to 3,561,714 _RS17675 ECOLIN_RS17680: ECOLIN_RS17680 - L(+)-tartrate dehydratase subunit beta, at 3,561,711 to 3,562,316 _RS17680 ECOLIN_RS17685: ECOLIN_RS17685 - L-tartrate/succinate antiporter, at 3,562,364 to 3,563,827 _RS17685 ECOLIN_RS17690: ECOLIN_RS17690 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,563,870 to 3,564,883 _RS17690
Group Condition ECOLIN_RS17670 ECOLIN_RS17675 ECOLIN_RS17680 ECOLIN_RS17685 ECOLIN_RS17690
carbon source L-Rhamnose -0.8 -0.2 +0.1 +0.1 N.D.
phage Bas52 -0.3 -0.3 -0.1 +0.0 N.D.
phage K25 +0.1 -0.4 -0.3 -0.1 N.D.
phage Bas37 -0.6 +0.3 +0.1 -0.1 N.D.
no phage control Control_Nissle -0.2 -0.1 -0.3 +0.2 N.D.
carbon source D-Glucose -0.5 +0.1 +0.1 -0.1 N.D.
phage JK38 -0.4 +0.2 +0.1 -0.1 N.D.
phage Bas31 -0.6 +0.3 -0.0 +0.2 N.D.
phage Bas04 -0.3 +0.2 -0.0 +0.1 N.D.
phage JK38 -0.3 +0.3 -0.0 +0.1 N.D.
phage Bas44 +0.6 -0.1 -0.2 -0.2 N.D.
phage Bas21 -0.2 +0.3 -0.1 +0.2 N.D.
phage RB51 +0.6 -0.0 -0.3 -0.1 N.D.
phage CEV1 +0.4 +0.1 -0.0 -0.2 N.D.
phage Bas45 +0.5 +0.2 -0.2 -0.0 N.D.
phage Bas51 +0.7 -0.0 -0.2 -0.0 N.D.
no phage control Control_Nissle +0.5 -0.1 -0.2 +0.2 N.D.
carbon source L-Rhamnose +0.1 +0.4 +0.1 -0.1 N.D.
phage Bas31 -0.1 +0.2 +0.2 +0.2 N.D.
phage EV219 +0.2 +0.3 -0.1 +0.2 N.D.
phage Bas48 +0.7 +0.1 -0.1 -0.1 N.D.
phage K25 +0.7 +0.0 -0.1 +0.1 N.D.
carbon source L-Arabinose +0.4 +0.3 +0.0 -0.0 N.D.
phage Bas37 +0.5 +0.3 -0.1 +0.3 N.D.
phage Bas22 +0.6 +0.2 +0.1 +0.1 N.D.
phage Bas48 +0.9 -0.1 -0.1 +0.1 N.D.
phage Bas68 +0.8 +0.1 +0.1 +0.1 N.D.
phage Bas21 +0.5 +0.3 +0.2 +0.1 N.D.
phage Bas52 +0.7 +0.3 -0.2 +0.2 N.D.
phage Bas04 +0.6 +0.3 +0.2 +0.4 N.D.
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