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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17370 and ECOLIN_RS17375 are separated by 10 nucleotides
ECOLIN_RS17375 and ECOLIN_RS17380 are separated by 72 nucleotides
ECOLIN_RS17380 and ECOLIN_RS17385 are separated by 41 nucleotides
ECOLIN_RS17385 and ECOLIN_RS17390 are separated by 10 nucleotides
ECOLIN_RS17370: ECOLIN_RS17370 - zinc-binding alcohol dehydrogenase family protein, at 3,499,329 to 3,500,345
_RS17370
ECOLIN_RS17375: ECOLIN_RS17375 - Ldh family oxidoreductase, at 3,500,356 to 3,501,366
_RS17375
ECOLIN_RS17380: ECOLIN_RS17380 - TRAP transporter substrate-binding protein, at 3,501,439 to 3,502,422
_RS17380
ECOLIN_RS17385: ECOLIN_RS17385 - TRAP transporter small permease, at 3,502,464 to 3,502,946
_RS17385
ECOLIN_RS17390: ECOLIN_RS17390 - TRAP transporter large permease subunit, at 3,502,957 to 3,504,261
_RS17390
Group
Condition
ECOLIN
_RS17370
ECOLIN
_RS17375
ECOLIN
_RS17380
ECOLIN
_RS17385
ECOLIN
_RS17390
phage
Phi92
-0.6
-0.7
-0.9
-0.7
-0.2
carbon source
L-Rhamnose
-0.7
-0.7
-0.7
-0.5
+0.1
carbon source
L-Rhamnose
-0.0
-0.5
-1.3
+0.1
-0.5
carbon source
Sodium-DL-Lactate
-0.2
-0.4
-1.1
-0.3
-0.2
phage
Phi92
-0.4
-0.5
-0.2
-0.4
-0.4
phage
Bas31
-0.0
-0.2
-0.6
-0.8
-0.2
phage
Bas05
-0.0
-0.0
-1.0
-0.7
-0.1
carbon source
D-Glucose
+0.6
-0.2
-0.3
-1.9
-0.0
phage
JK38
-0.5
+0.1
-0.1
-0.9
-0.2
phage
CEV1
+0.3
+0.0
-0.4
-1.3
-0.1
phage
Bas45
-0.2
-1.4
+0.6
-0.1
-0.3
phage
Bas38
-0.3
-0.3
-0.4
+0.3
-0.2
carbon source
L-Arabinose
-0.1
+0.3
-1.7
+0.5
+0.3
phage
CEV1
-0.1
+0.7
-0.4
-0.5
-0.0
phage
Bas52
-0.2
+0.2
-0.5
+0.8
-0.2
phage
Bas10
-0.2
-0.1
+0.7
+0.4
-0.3
phage
K25
-0.0
-0.8
+1.0
+0.5
-0.3
phage
K20
-0.6
+0.5
+0.3
-0.2
+0.5
phage
Bas63
-0.2
-0.5
+0.9
+0.3
+0.2
phage
Bas44
+0.2
-0.3
+1.1
-0.3
+0.0
carbon source
L-Arabinose
+0.4
+0.3
-0.1
+0.7
+0.1
phage
K20
-0.0
+0.1
+1.0
+0.6
-0.1
no phage control
Control_Nissle
+0.2
-0.5
+1.0
+0.6
+0.2
phage
Bas27
-0.1
+0.5
+0.3
+0.7
+0.2
phage
Bas48
+0.1
+0.2
+0.6
+0.6
+0.3
phage
Bas22
+0.4
-0.2
+0.7
+1.2
-0.3
no phage control
Control_Nissle
+0.5
-0.1
+0.6
+0.4
+0.4
phage
P1vir
-0.0
+0.4
+0.7
+1.2
-0.3
phage
Bas63
+0.5
+0.4
+1.5
-0.4
+0.1
phage
Bas51
+0.3
-0.1
+1.2
+1.3
+0.0
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