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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS17190 and ECOLIN_RS17195 overlap by 1 nucleotides
ECOLIN_RS17195 and ECOLIN_RS17200 are separated by 45 nucleotides
ECOLIN_RS17200 and ECOLIN_RS17205 are separated by 31 nucleotides
ECOLIN_RS17205 and ECOLIN_RS17210 are separated by 174 nucleotides
ECOLIN_RS17190: ECOLIN_RS17190 - hypothetical protein, at 3,465,823 to 3,466,659
_RS17190
ECOLIN_RS17195: ECOLIN_RS17195 - lipopolysaccharide biosynthesis protein, at 3,466,659 to 3,468,008
_RS17195
ECOLIN_RS17200: ECOLIN_RS17200 - hypothetical protein, at 3,468,054 to 3,468,812
_RS17200
ECOLIN_RS17205: ECOLIN_RS17205 - dTMP kinase, at 3,468,844 to 3,469,557
_RS17205
ECOLIN_RS17210: ECOLIN_RS17210 - dTMP kinase, at 3,469,732 to 3,470,424
_RS17210
Group
Condition
ECOLIN
_RS17190
ECOLIN
_RS17195
ECOLIN
_RS17200
ECOLIN
_RS17205
ECOLIN
_RS17210
phage
Bas21
+0.1
+0.1
-0.5
-0.8
-0.4
phage
TP7
-0.2
-0.0
-1.0
+0.0
-0.2
phage
TP7
-0.4
+0.1
-0.8
+0.1
-0.2
phage
Bas48
+0.0
-0.1
-0.2
-0.4
-0.4
phage
Phi92
-0.0
+0.1
-0.6
+0.0
-0.5
phage
Bas37
+0.1
+0.2
-0.6
-0.2
-0.5
phage
Bas38
+0.0
+0.1
-0.2
-0.1
-0.8
phage
Bas22
+0.1
-0.4
-0.1
-0.2
-0.3
phage
Bas21
-0.0
+0.1
-0.4
-0.2
-0.4
phage
Bas45
-0.4
+0.0
-0.4
+0.4
-0.5
phage
Bas27
+0.2
+0.2
-0.2
-0.4
-0.4
phage
Phi92
-0.3
+0.0
-0.2
+0.2
-0.3
phage
Bas04
+0.3
+0.3
-0.1
-0.5
-0.6
phage
Bas10
+0.4
+0.1
-0.1
-0.3
-0.6
phage
CEV1
+0.2
+0.0
-0.7
+0.3
-0.4
phage
CEV1
-0.1
+0.1
-0.2
+0.4
-0.7
phage
Bas05
+0.1
-0.0
-0.3
+0.2
-0.5
no phage control
Control_Nissle
-0.2
-0.6
+0.1
+0.1
+0.1
phage
Bas37
+0.1
+0.1
-0.4
+0.1
-0.4
phage
JK38
-0.1
+0.2
-0.4
+0.5
-0.4
phage
Bas31
+0.2
+0.2
-0.2
+0.4
-0.9
phage
JK38
-0.0
+0.2
-0.5
+0.5
-0.2
phage
Bas68
+0.1
-0.5
-0.1
+0.6
-0.1
carbon source
L-Arabinose
+0.2
-0.2
-0.5
-0.0
+0.7
carbon source
D-Glucose
+0.3
+0.3
-0.1
-0.7
+0.7
phage
EV219
-0.1
+0.3
-0.3
+0.4
+0.1
carbon source
L-Arabinose
-0.1
+0.2
-0.3
+0.2
+0.5
carbon source
L-Rhamnose
-0.4
+0.2
+0.6
+0.5
-0.2
carbon source
Casamino-acids
-0.1
+0.3
+0.1
+0.6
+0.1
phage
K20
-0.0
-0.1
+0.1
+0.7
+0.6
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